CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH09922
KRH22653
KRH23409
KRH26664
KRH31520
KRH65384
KRH76090
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	KRG97393	AT1G27300.1	21798944
AT4G14950.1	KRH31520	AT1G27300.1	21798944
AT4G14950.1	KRH76090	AT1G27300.1	21798944
AT4G14950.1	KRH09922	AT3G16310.1	21798944
AT4G14950.1	KRH23409	AT3G16310.1	21798944
AT4G14950.1	KRH65384	AT3G60600.1	21798944
AT4G14950.1	KRH76164	AT3G60600.1	21798944
AT4G14950.1	KRH22653	AT5G22290.1	21798944
AT4G14950.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77865	Soybean	golgi, plastid, vacuole	92.05	89.88
Bra039706.1-P	Field mustard	plasma membrane	61.93	73.01
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	71.08	70.91
VIT_05s0020g03160.t01	Wine grape	plasma membrane	71.57	67.65
AT1G05360.1	Thale cress	plasma membrane	67.23	67.07
Bra032466.1-P	Field mustard	mitochondrion, plasma membrane, plastid, vacuole	66.75	66.27
Bra036917.1-P	Field mustard	plasma membrane	60.96	65.89
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	66.02	64.62
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	65.78	64.39
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	23.86	58.93
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	24.1	58.14
TraesCS2A01G197700.1	Wheat	plasma membrane	57.11	55.76
TraesCS2D01G205700.1	Wheat	plasma membrane	56.87	55.66
Os07t0571500-00	Rice	plasma membrane	57.11	55.5
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	55.18	55.31
EER99579	Sorghum	plasma membrane	56.14	55.21
TraesCS2B01G225100.1	Wheat	plasma membrane	56.39	55.19
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	51.57	53.5
CDX93269	Canola	mitochondrion	9.64	44.94
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	56.39	43.74

Protein Annotations

EntrezGene:100803288	MapMan:35.1	EMBL:ACUP02006730	EnsemblPlantsGene:GLYMA_11G004900	GO:GO:0000407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006887
GO:GO:0007029	GO:GO:0007030	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	UniProt:I1LFT3	EnsemblPlants:KRH27628	ProteinID:KRH27628	ProteinID:KRH27628.1	PFAM:PF09335
PANTHER:PTHR10281	PANTHER:PTHR10281:SF68	InterPro:SNARE_assoc	TMHMM:TMhelix	UniParc:UPI000233D446	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:368505..377487

Molecular Weight (calculated)

46415.9 Da

IEP (calculated)

8.570

GRAVY (calculated)

0.240

Length

415 amino acids

Sequence
(BLAST)

001: MGSGNILPSS GSSDMSISEL REKHHWELEN LTLTTQPLKT LKFFTLAVIQ YIKKTAIYLL AKGGWVMLFS VAVGTLGIVL MTLGCLHEKH LEELLEYFRF
101: GLWWVALGVA SSIGLGSGLH TFVLYLGPHI ALFTIGAVQC GRVDLKSAPY DTIQLKRGPS WLDKDCSEFG PPLFQSQVPL SSILPQVQLE AILWGIGTAI
201: GELPPYFISR AARLSGGRVD AMEELDSEDK RVLSRIKCWF LSHSQHLNFF TILVLASVPN PLFDLAGIMC GQFGIPFWKF FLATLIGKAI IKTHIQTIFI
301: ISVCNNQLLD WIENEFIWVL SHIPGFASVL PRVTASLHAM KDKYLKAPHP LSPNKQGKKW DFSFASVWNT VVWLMLMNFF VKIVNATSQR YLKKQQETQL
401: AALTEKSTPT DSDAQ

Best Arabidopsis Sequence Match ( AT4G14950.1 )
(BLAST)

001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.