CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, vacuole

Predictor Summary:

plastid 2
golgi 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH09922
KRH22653
KRH23409
KRH26664
KRH31520
KRH65384
KRH76090
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	KRG97393	AT1G27300.1	21798944
AT4G14950.1	KRH31520	AT1G27300.1	21798944
AT4G14950.1	KRH76090	AT1G27300.1	21798944
AT4G14950.1	KRH09922	AT3G16310.1	21798944
AT4G14950.1	KRH23409	AT3G16310.1	21798944
AT4G14950.1	KRH65384	AT3G60600.1	21798944
AT4G14950.1	KRH76164	AT3G60600.1	21798944
AT4G14950.1	KRH22653	AT5G22290.1	21798944
AT4G14950.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27628	Soybean	cytosol, nucleus, plasma membrane	89.88	92.05
Bra039706.1-P	Field mustard	plasma membrane	58.82	71.02
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	67.29	68.75
VIT_05s0020g03160.t01	Wine grape	plasma membrane	69.41	67.2
AT1G05360.1	Thale cress	plasma membrane	65.18	66.59
Bra032466.1-P	Field mustard	mitochondrion, plasma membrane, plastid, vacuole	64.0	65.07
Bra036917.1-P	Field mustard	plasma membrane	58.59	64.84
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	63.06	63.21
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	62.82	62.97
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	22.59	57.14
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	23.06	56.98
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	54.82	56.28
EER99579	Sorghum	plasma membrane	55.76	56.16
TraesCS2D01G205700.1	Wheat	plasma membrane	56.0	56.13
TraesCS2A01G197700.1	Wheat	plasma membrane	55.76	55.76
TraesCS2B01G225100.1	Wheat	plasma membrane	55.53	55.66
Os07t0571500-00	Rice	plasma membrane	55.29	55.04
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	50.12	53.25
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	56.24	44.67
CDX93269	Canola	mitochondrion	9.18	43.82

Protein Annotations

MapMan:35.1	EMBL:ACUP02000685	EnsemblPlantsGene:GLYMA_01G238700	GO:GO:0000407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006887	GO:GO:0007029
GO:GO:0007030	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
UniProt:I1JAU3	EnsemblPlants:KRH77865	ProteinID:KRH77865	ProteinID:KRH77865.1	PFAM:PF09335	PANTHER:PTHR10281
PANTHER:PTHR10281:SF68	InterPro:SNARE_assoc	TMHMM:TMhelix	UniParc:UPI0002337A14	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:56301355..56307745

Molecular Weight (calculated)

47877.5 Da

IEP (calculated)

8.992

GRAVY (calculated)

0.182

Length

425 amino acids

Sequence
(BLAST)

001: MRAIMGSGNI RPSSSGCSHL SISELREKHH WELENLTLTS QPFKTLKFFT LAVIQYIKKT SLYLLAKGGW VMLFSVAVGT LGIVLMTLGC LHEKHLEELL
101: EYFRFGLWWV PLGVASSIGL GSGLHTFVLY LGPHIALFTL KAVQCGRVDL KSAPYDTTQL SRSASWLDKN CSEFGPPLFQ SVYDSQVPLS SILPQVQLEA
201: ILWGIGTAIG ELPPYFISRA ARLSGSRVDA MEELDSEDKR VLSRIKCWFL SHSQHLNFFT ILVLASVPNP LFDLAGIMCG QFGIPFWKFF LATLIGKAII
301: KTHIQTIFII SVCNNQLLHW IENEFIWVLS HIPGFASVLP RVTSSLRAMK DKYLKKDSHP VSPNKQGEKW DFSFTLVWNT VVWLMLMNFF VKIVNATAQR
401: YLKKQQETQL SALTEKSTPT DSDAQ

Best Arabidopsis Sequence Match ( AT4G14950.1 )
(BLAST)

001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.