Factsheet for GSMUA_Achr8P17040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P01370_001
GSMUA_Achr2P04100_001
GSMUA_Achr4P26720_001
GSMUA_Achr6P04140_001
GSMUA_Achr6P06250_001
GSMUA_Achr6P21760_001
GSMUA_Achr6P25070_001
GSMUA_Achr6P29380_001
GSMUA_Achr7P11860_001
GSMUA_Achr8P14320_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	GSMUA_Achr6P21760_001	AT3G20510.1	21798944
AT1G15760.1	GSMUA_Achr6P29380_001	AT3G20510.1	21798944
AT1G15760.1	GSMUA_Achr6P04140_001	AT4G09580.1	21798944
AT1G15760.1	GSMUA_Achr6P06250_001	AT4G09580.1	21798944
AT1G15760.1	GSMUA_Achr7P11860_001	AT4G09580.1	21798944
AT1G15760.1	GSMUA_Achr6P25070_001	AT4G14950.1	21798944
AT1G15760.1	GSMUA_Achr11P...	AT5G43460.1	21798944
AT1G15760.1	GSMUA_Achr1P01370_001	AT5G43460.1	21798944
AT1G15760.1	GSMUA_Achr2P04100_001	AT5G43460.1	21798944
AT1G15760.1	GSMUA_Achr4P26720_001	AT5G43460.1	21798944
AT1G15760.1	GSMUA_Achr8P14320_001	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P14710_001	Banana	cytosol	71.59	71.59
GSMUA_Achr9P26950_001	Banana	cytosol	44.32	50.65
KRH09696	Soybean	cytosol	43.18	38.78
GSMUA_Achr4P09380_001	Banana	cytosol	41.48	38.62
CDX67952	Canola	cytosol	40.91	38.5
Bra003571.1-P	Field mustard	cytosol	40.34	37.97
CDY39968	Canola	cytosol	38.07	37.85
GSMUA_Achr1P09970_001	Banana	cytosol	40.91	37.5
GSMUA_Achr8P25150_001	Banana	cytosol	40.34	37.37
Bra035174.1-P	Field mustard	cytosol	37.5	37.29
CDX87319	Canola	cytosol	37.5	37.29
CDX79380	Canola	cytosol	40.91	37.11
Solyc03g117340.1.1	Tomato	cytosol	37.5	36.46
KRH23610	Soybean	cytosol	39.2	35.94
PGSC0003DMT400073434	Potato	cytosol	27.27	35.82
PGSC0003DMT400073435	Potato	cytosol	38.64	35.6
AT1G80520.1	Thale cress	nucleus	38.64	35.42
Solyc06g068310.1.1	Tomato	cytosol	38.64	35.23
CDY61373	Canola	cytosol	40.34	35.15
CDY36586	Canola	nucleus	39.77	34.65
Bra026110.1-P	Field mustard	cytosol	39.77	34.65
PGSC0003DMT400084778	Potato	nucleus	36.36	34.22
AT1G15760.1	Thale cress	nucleus	39.2	34.16
KRH47406	Soybean	cytosol	39.2	33.99
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	42.05	31.49
KRH44503	Soybean	cytosol	38.64	31.34
EES11537	Sorghum	cytosol	31.25	29.57
Solyc03g117310.1.1	Tomato	cytosol	35.23	29.52
PGSC0003DMT400036834	Potato	nucleus	34.66	29.05
TraesCS2B01G547200.1	Wheat	cytosol	32.39	28.64
Os04t0644100-01	Rice	cytosol	30.11	28.19
TraesCS2D01G520300.1	Wheat	cytosol	32.95	27.88
TraesCS2A01G518900.1	Wheat	cytosol	32.39	27.14
VIT_11s0118g00550.t01	Wine grape	cytosol	38.07	26.69
Zm00001d002096_P001	Maize	cytosol	30.11	25.85
PGSC0003DMT400078859	Potato	cytosol	36.36	25.3
HORVU2Hr1G114860.1	Barley	mitochondrion	15.91	24.78
Zm00001d036740_P001	Maize	cytosol	27.84	24.38
Solyc07g007350.1.1	Tomato	cytosol	34.66	23.92
EER90109	Sorghum	nucleus	30.11	23.87
TraesCS7B01G432100.1	Wheat	cytosol	27.84	23.67
HORVU7Hr1G115240.1	Barley	cytosol, extracellular, mitochondrion	27.84	23.67
TraesCS7B01G044000.1	Wheat	cytosol	30.68	23.58
TraesCS7A01G141900.1	Wheat	cytosol	30.68	23.48
HORVU7Hr1G049610.2	Barley	cytosol, extracellular, plastid	27.27	23.41
TraesCS7D01G143100.1	Wheat	cytosol	30.68	23.28
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	28.41	23.04
HORVU7Hr1G029260.1	Barley	cytosol	30.11	22.75
Zm00001d046580_P001	Maize	cytosol	26.7	22.27
Os06t0645500-01	Rice	cytosol, nucleus, peroxisome	29.55	21.85
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	30.11	21.81
TraesCS7A01G515500.1	Wheat	cytosol, extracellular, mitochondrion	26.7	21.56
KRH12842	Soybean	cytosol, nucleus, plastid	34.09	21.13
OQU75953	Sorghum	cytosol	31.25	20.83
KRH20227	Soybean	cytosol	34.66	20.68
KRH37823	Soybean	nucleus	31.82	19.11
KRH03583	Soybean	nucleus	34.09	18.87
AT2G12462.1	Thale cress	cytosol	26.14	18.47
Bra013153.1-P	Field mustard	cytosol	25.0	17.74
CDX93107	Canola	cytosol	25.0	17.74
CDY50403	Canola	cytosol	25.0	17.74
Zm00001d045137_P001	Maize	plastid	16.48	16.96
OQU80824	Sorghum	plastid	17.61	15.27
Os06t0179100-00	Rice	cytosol, nucleus	21.59	12.54

Protein Annotations

EnsemblPlants:GSMUA_Achr8P17040_001	EnsemblPlants:GSMUA_Achr8T17040_001	EnsemblPlantsGene:GSMUA_Achr8G17040_001	Gene3D:1.10.150.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001660	InterPro:SAM	InterPro:SAM/pointed_sf	PANTHER:PTHR33915	PANTHER:PTHR33915:SF1
PFAM:PF07647	SUPFAM:SSF47769	UniParc:UPI0002953C95	UniProt:M0TR57	MapMan:35.2	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G17040_001]

Coordinates

chr8:+:15735148..15735678

Molecular Weight (calculated)

20297.3 Da

IEP (calculated)

9.703

GRAVY (calculated)

-0.622

Length

176 amino acids

Sequence
(BLAST)

001: MDWYSWLLQT NLDPDLVYEY SLLLASNEVE EDDVAHFDHE FLQSMGISIA KHRLEMLKLA KRGKTKSSSR PVSLLLVAVT KTKNCIARYF RSFINHDASP
101: IVVVPRSSYF DGGGPKSDML KRNKRMSRIK QGRVTLYMAP QAMAYKESKD RKEDSHRGSS GEETRWESMF QDLKPT

Best Arabidopsis Sequence Match ( AT1G15760.1 )
(BLAST)

001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT

Arabidopsis Description

At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.