Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- plastid 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU2Hr1G038330.2 | |
HORVU2Hr1G046220.7 | |
HORVU4Hr1G006740.1 | |
HORVU4Hr1G080140.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 93.66 | 92.75 |
TraesCS7B01G432100.1 | Wheat | cytosol | 89.76 | 88.89 |
TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 91.71 | 86.64 |
TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 90.24 | 84.86 |
Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 68.78 | 59.24 |
EER90109 | Sorghum | nucleus | 62.93 | 58.11 |
Zm00001d046580_P001 | Maize | cytosol | 57.56 | 55.92 |
Zm00001d036740_P001 | Maize | cytosol | 50.24 | 51.24 |
Bra035174.1-P | Field mustard | cytosol | 28.29 | 32.77 |
CDX87319 | Canola | cytosol | 28.29 | 32.77 |
GSMUA_Achr9P26950_001 | Banana | cytosol | 24.39 | 32.47 |
CDY39968 | Canola | cytosol | 27.8 | 32.2 |
CDX67952 | Canola | cytosol | 29.27 | 32.09 |
Bra003571.1-P | Field mustard | cytosol | 28.78 | 31.55 |
AT1G80520.1 | Thale cress | nucleus | 28.78 | 30.73 |
CDX79380 | Canola | cytosol | 28.78 | 30.41 |
PGSC0003DMT400073435 | Potato | cytosol | 28.29 | 30.37 |
KRH23610 | Soybean | cytosol | 27.8 | 29.69 |
Solyc06g068310.1.1 | Tomato | cytosol | 27.8 | 29.53 |
GSMUA_Achr8P25150_001 | Banana | cytosol | 27.32 | 29.47 |
KRH09696 | Soybean | cytosol | 27.8 | 29.08 |
Solyc03g117340.1.1 | Tomato | cytosol | 25.37 | 28.73 |
OQU80824 | Sorghum | plastid | 28.29 | 28.57 |
GSMUA_Achr8P14710_001 | Banana | cytosol | 24.39 | 28.41 |
HORVU7Hr1G029260.1 | Barley | cytosol | 32.2 | 28.33 |
HORVU2Hr1G114860.1 | Barley | mitochondrion | 15.61 | 28.32 |
GSMUA_Achr1P09970_001 | Banana | cytosol | 26.34 | 28.12 |
GSMUA_Achr4P09380_001 | Banana | cytosol | 25.85 | 28.04 |
AT1G15760.1 | Thale cress | nucleus | 27.32 | 27.72 |
PGSC0003DMT400084778 | Potato | nucleus | 24.88 | 27.27 |
GSMUA_Achr8P17040_001 | Banana | cytosol | 23.41 | 27.27 |
CDY36586 | Canola | nucleus | 25.85 | 26.24 |
Bra026110.1-P | Field mustard | cytosol | 25.85 | 26.24 |
CDY61373 | Canola | cytosol | 25.85 | 26.24 |
PGSC0003DMT400073434 | Potato | cytosol | 17.07 | 26.12 |
VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 28.29 | 24.68 |
KRH47406 | Soybean | cytosol | 22.93 | 23.15 |
Solyc03g117310.1.1 | Tomato | cytosol | 23.41 | 22.86 |
PGSC0003DMT400036834 | Potato | nucleus | 23.41 | 22.86 |
KRH44503 | Soybean | cytosol | 22.93 | 21.66 |
VIT_11s0118g00550.t01 | Wine grape | cytosol | 26.34 | 21.51 |
PGSC0003DMT400078859 | Potato | cytosol | 24.88 | 20.16 |
Solyc07g007350.1.1 | Tomato | cytosol | 24.88 | 20.0 |
CDY50403 | Canola | cytosol | 23.9 | 19.76 |
CDX93107 | Canola | cytosol | 23.9 | 19.76 |
Bra013153.1-P | Field mustard | cytosol | 23.9 | 19.76 |
AT2G12462.1 | Thale cress | cytosol | 23.41 | 19.28 |
KRH20227 | Soybean | cytosol | 24.39 | 16.95 |
KRH12842 | Soybean | cytosol, nucleus, plastid | 22.44 | 16.2 |
KRH03583 | Soybean | nucleus | 23.9 | 15.41 |
KRH37823 | Soybean | nucleus | 21.46 | 15.02 |
Protein Annotations
EMBL:AK354781 | EnsemblPlants:HORVU7Hr1G049610.2 | EnsemblPlantsGene:HORVU7Hr1G049610 | Gene3D:1.10.150.50 | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF4 |
SEG:seg | UniParc:UPI0002004822 | UniProt:F2CT29 | MapMan:35.2 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CT29]
Coordinates
chrchr7H:+:174836507..174837783
Molecular Weight (calculated)
21751.6 Da
IEP (calculated)
7.342
GRAVY (calculated)
-0.300
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWYAWLSKA GLTPAATYEY GLLFSENELE PGDAPDFDHD LLKSMGIAVA KHRLEILKLA RKDAAAVASS HSSAAAQLAR RAGRCIARCA RRLGGGRRYS
101: SSSVTVVPRI CNGAAGDVVV RAGAVRRRSS VKKMVLMITD GGVASGGGVR FSGSQKASLI FQDCAYDDDN GAGEEGDEER CSEGGTAGGE SEIKWDSMFQ
201: DLKPT
101: SSSVTVVPRI CNGAAGDVVV RAGAVRRRSS VKKMVLMITD GGVASGGGVR FSGSQKASLI FQDCAYDDDN GAGEEGDEER CSEGGTAGGE SEIKWDSMFQ
201: DLKPT
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.