Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67952 | Canola | cytosol | 97.86 | 97.86 |
| AT1G80520.1 | Thale cress | nucleus | 75.4 | 73.44 |
| Bra035174.1-P | Field mustard | cytosol | 66.31 | 70.06 |
| Bra026110.1-P | Field mustard | cytosol | 65.24 | 60.4 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 40.11 | 48.7 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 40.11 | 42.61 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 37.97 | 40.34 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 40.11 | 39.47 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 38.5 | 38.1 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 36.9 | 35.94 |
| Os04t0644100-01 | Rice | cytosol | 29.95 | 29.79 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 31.55 | 28.78 |
| EES11537 | Sorghum | cytosol | 28.34 | 28.49 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 31.02 | 28.02 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 30.48 | 27.54 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 30.48 | 26.27 |
| EER90109 | Sorghum | nucleus | 31.02 | 26.13 |
| Zm00001d046580_P001 | Maize | cytosol | 28.88 | 25.59 |
| Zm00001d036740_P001 | Maize | cytosol | 27.27 | 25.37 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 29.41 | 25.23 |
| Zm00001d002096_P001 | Maize | cytosol | 27.27 | 24.88 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 29.95 | 23.53 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 13.9 | 23.01 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 25.67 | 22.86 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 24.06 | 22.61 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 25.13 | 22.6 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 26.2 | 20.16 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 24.6 | 20.09 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 24.6 | 20.0 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 24.6 | 19.83 |
| OQU75953 | Sorghum | cytosol | 27.27 | 19.32 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 24.06 | 19.31 |
| Bra013153.1-P | Field mustard | cytosol | 24.6 | 18.55 |
| Zm00001d045137_P001 | Maize | plastid | 15.51 | 16.96 |
| OQU80824 | Sorghum | plastid | 16.58 | 15.27 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 18.72 | 11.55 |
Protein Annotations
| EnsemblPlants:Bra003571.1 | EnsemblPlants:Bra003571.1-P | EnsemblPlantsGene:Bra003571 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 |
| PANTHER:PTHR33915:SF1 | SUPFAM:SSF47769 | UniParc:UPI0002541302 | UniProt:M4CH88 | MapMan:35.2 | : |
Description
AT1G80520 (E=4e-077) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15760.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA07:+:13849738..13850301
Molecular Weight (calculated)
21620.9 Da
IEP (calculated)
9.593
GRAVY (calculated)
-0.541
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWFSWLTRT KLEDSLIYEY GLSFSHNELE YEDISYFNHE FLQSMGISIA KHRLEILKLA RRDKKPSPLT ARSISRVLVA IRKTGKCFSE YVRAWIRREE
101: SSRALVVVPR SSGNGSWKGA LMKRNKRSVT PSSGVKEERL LLTNGTPCRL ESFSSSTVLD YGLKEEKGCD VEEEIKWDSM FQNLKPT
101: SSRALVVVPR SSGNGSWKGA LMKRNKRSVT PSSGVKEERL LLTNGTPCRL ESFSSSTVLD YGLKEEKGCD VEEEIKWDSM FQNLKPT
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.