Factsheet for Zm00001d045137_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013817_P001
Zm00001d016727_P001
Zm00001d018662_P001
Zm00001d021861_P001
Zm00001d025020_P001
Zm00001d027680_P003
Zm00001d032483_P001
Zm00001d032568_P001
Zm00001d033054_P001
Zm00001d033664_P001
Zm00001d040150_P001
Zm00001d048402_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	Zm00001d013817_P001	AT3G20510.1	21798944
AT1G15760.1	Zm00001d033054_P001	AT3G20510.1	21798944
AT1G15760.1	Zm00001d033664_P001	AT4G09580.1	21798944
AT1G15760.1	Zm00001d016727_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d021861_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d040150_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d018662_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d025020_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d027680_P003	AT5G43460.1	21798944
AT1G15760.1	Zm00001d032483_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d032568_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d048402_P001	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	55.56	39.09
OQU75953	Sorghum	cytosol	53.8	34.85
TraesCS7D01G143100.1	Wheat	cytosol	39.77	29.31
TraesCS7B01G044000.1	Wheat	cytosol	39.18	29.26
HORVU7Hr1G029260.1	Barley	cytosol	39.77	29.18
TraesCS7A01G141900.1	Wheat	cytosol	37.43	27.83
Zm00001d036740_P001	Maize	cytosol	25.15	21.39
GSMUA_Achr9P26950_001	Banana	cytosol	17.54	19.48
Zm00001d046580_P001	Maize	cytosol	23.39	18.96
Zm00001d002096_P001	Maize	cytosol	21.05	17.56
GSMUA_Achr1P09970_001	Banana	cytosol	18.71	16.67
GSMUA_Achr8P17040_001	Banana	cytosol	16.96	16.48
GSMUA_Achr8P14710_001	Banana	cytosol	16.37	15.91
KRH09696	Soybean	cytosol	18.13	15.82
GSMUA_Achr8P25150_001	Banana	cytosol	17.54	15.79
KRH23610	Soybean	cytosol	17.54	15.62
AT1G80520.1	Thale cress	nucleus	17.54	15.62
Bra003571.1-P	Field mustard	cytosol	16.96	15.51
CDX67952	Canola	cytosol	16.96	15.51
CDY39968	Canola	cytosol	15.79	15.25
Bra035174.1-P	Field mustard	cytosol	15.79	15.25
CDX87319	Canola	cytosol	15.79	15.25
Solyc06g068310.1.1	Tomato	cytosol	16.96	15.03
CDX79380	Canola	cytosol	16.96	14.95
Solyc03g117340.1.1	Tomato	cytosol	15.79	14.92
AT1G15760.1	Thale cress	nucleus	16.96	14.36
Bra026110.1-P	Field mustard	cytosol	16.96	14.36
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	19.3	14.04
PGSC0003DMT400084778	Potato	nucleus	15.2	13.9
CDY61373	Canola	cytosol	16.37	13.86
Os06t0179100-00	Rice	cytosol, nucleus	24.56	13.86
CDY36586	Canola	nucleus	16.37	13.86
Solyc03g117310.1.1	Tomato	cytosol	16.96	13.81
GSMUA_Achr4P09380_001	Banana	cytosol	15.2	13.76
PGSC0003DMT400036834	Potato	nucleus	16.37	13.33
KRH47406	Soybean	cytosol	15.79	13.3
AT2G12462.1	Thale cress	cytosol	19.3	13.25
PGSC0003DMT400073435	Potato	cytosol	14.62	13.09
CDX93107	Canola	cytosol	18.13	12.5
Bra013153.1-P	Field mustard	cytosol	18.13	12.5
CDY50403	Canola	cytosol	18.13	12.5
VIT_11s0118g00550.t01	Wine grape	cytosol	17.54	11.95
PGSC0003DMT400078859	Potato	cytosol	17.54	11.86
Solyc07g007350.1.1	Tomato	cytosol	17.54	11.76
PGSC0003DMT400073434	Potato	cytosol	7.6	9.7
KRH44503	Soybean	cytosol	12.28	9.68
KRH37823	Soybean	nucleus	15.79	9.22
KRH12842	Soybean	cytosol, nucleus, plastid	15.2	9.15
KRH20227	Soybean	cytosol	14.62	8.47
KRH03583	Soybean	nucleus	14.04	7.55

Protein Annotations

EnsemblPlants:Zm00001d045137_P001	EnsemblPlants:Zm00001d045137_T001	EnsemblPlantsGene:Zm00001d045137	PANTHER:PTHR33915	PANTHER:PTHR33915:SF3	ProteinID:AQL01633.1
SEG:seg	UniParc:UPI000844093D	UniProt:A0A1D6NTX8	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr9:-:14002713..14003228

Molecular Weight (calculated)

18643.7 Da

IEP (calculated)

11.743

GRAVY (calculated)

-0.234

Length

171 amino acids

Sequence
(BLAST)

001: MGVAVAKHRL EILKLARKES SSSHRKAAAI AVVLPWRATR LLAAAVHRSA RSALGRLRAC RDRNRERGRD RDRAAAVLAT QRVPLLRHRG GRVALAHRHS
101: SCWSKAAPPV ATIRTGGKLL VKTLPAPAAS IAACRLVSTD VCSCDEDEEV AVMDGGEAMR WESMFQDLRP T

Best Arabidopsis Sequence Match ( AT1G80520.1 )
(BLAST)

001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT

Arabidopsis Description

Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.