Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 56.82 | 61.73 |
| Zm00001d045137_P001 | Maize | plastid | 34.85 | 53.8 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 39.77 | 45.26 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 39.39 | 45.22 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 38.64 | 44.54 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 39.02 | 44.21 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 20.83 | 35.71 |
| EES11537 | Sorghum | cytosol | 23.86 | 33.87 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 20.83 | 31.25 |
| EER90109 | Sorghum | nucleus | 26.14 | 31.08 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 20.45 | 30.68 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 20.08 | 27.89 |
| CDX67952 | Canola | cytosol | 19.32 | 27.27 |
| Bra003571.1-P | Field mustard | cytosol | 19.32 | 27.27 |
| CDY39968 | Canola | cytosol | 18.18 | 27.12 |
| CDX87319 | Canola | cytosol | 18.18 | 27.12 |
| Bra035174.1-P | Field mustard | cytosol | 18.18 | 27.12 |
| KRH23610 | Soybean | cytosol | 19.7 | 27.08 |
| AT1G80520.1 | Thale cress | nucleus | 19.7 | 27.08 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 19.7 | 27.08 |
| Solyc03g117340.1.1 | Tomato | cytosol | 18.56 | 27.07 |
| CDX79380 | Canola | cytosol | 19.7 | 26.8 |
| KRH09696 | Soybean | cytosol | 19.7 | 26.53 |
| PGSC0003DMT400073434 | Potato | cytosol | 13.26 | 26.12 |
| PGSC0003DMT400073435 | Potato | cytosol | 18.56 | 25.65 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 18.18 | 25.4 |
| PGSC0003DMT400084778 | Potato | nucleus | 17.8 | 25.13 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 22.35 | 25.11 |
| AT1G15760.1 | Thale cress | nucleus | 18.94 | 24.75 |
| Solyc06g068310.1.1 | Tomato | cytosol | 17.8 | 24.35 |
| CDY61373 | Canola | cytosol | 18.56 | 24.26 |
| Bra026110.1-P | Field mustard | cytosol | 18.56 | 24.26 |
| CDY36586 | Canola | nucleus | 18.56 | 24.26 |
| KRH47406 | Soybean | cytosol | 17.8 | 23.15 |
| Solyc03g117310.1.1 | Tomato | cytosol | 17.8 | 22.38 |
| PGSC0003DMT400078859 | Potato | cytosol | 21.21 | 22.13 |
| PGSC0003DMT400036834 | Potato | nucleus | 17.42 | 21.9 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 24.62 | 21.45 |
| OQU80824 | Sorghum | plastid | 16.29 | 21.18 |
| Solyc07g007350.1.1 | Tomato | cytosol | 20.45 | 21.18 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 20.08 | 21.12 |
| KRH44503 | Soybean | cytosol | 16.29 | 19.82 |
| AT2G12462.1 | Thale cress | cytosol | 18.56 | 19.68 |
| CDX93107 | Canola | cytosol | 17.05 | 18.15 |
| Bra013153.1-P | Field mustard | cytosol | 17.05 | 18.15 |
| CDY50403 | Canola | cytosol | 17.05 | 18.15 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 18.94 | 17.61 |
| KRH37823 | Soybean | nucleus | 19.32 | 17.41 |
| KRH20227 | Soybean | cytosol | 19.32 | 17.29 |
| KRH03583 | Soybean | nucleus | 18.18 | 15.09 |
Protein Annotations
| EnsemblPlants:OQU75953 | EnsemblPlantsGene:SORBI_3010G061700 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF3 |
| ProteinID:OQU75953 | ProteinID:OQU75953.1 | SEG:seg | SUPFAM:SSF47769 | UniParc:UPI0009DC8C57 | UniProt:A0A1W0VRP5 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:4822056..4823339
Molecular Weight (calculated)
28093.9 Da
IEP (calculated)
10.447
GRAVY (calculated)
-0.052
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWYAWLCRA GLHPDVAFEY ALVFARNELG AADVRHMDHE FLLSMGVAVA KHRLEILKLA RKDPSSSSSS HGGRAAVAAA GAITALPWRA TRLLAAAVHR
101: SARSALGRLR ASVSSRARDR DRAAAVPVPV PVLATPRLPP LLRHHRGGKV VAHSSWTKIA SPVAVRGGGK LPLPALPMMP THVVSRPILL TNSRADKWRS
201: NGNGAAGRTL PAPAGSIAAC LMSTDVCSCD EDDGSGSGSD VEVVVVDVGE EMRWESMFQD LKPT
101: SARSALGRLR ASVSSRARDR DRAAAVPVPV PVLATPRLPP LLRHHRGGKV VAHSSWTKIA SPVAVRGGGK LPLPALPMMP THVVSRPILL TNSRADKWRS
201: NGNGAAGRTL PAPAGSIAAC LMSTDVCSCD EDDGSGSGSD VEVVVVDVGE EMRWESMFQD LKPT
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.