Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87319 | Canola | cytosol | 97.18 | 97.18 |
| CDX67952 | Canola | cytosol | 72.88 | 68.98 |
| CDX79380 | Canola | cytosol | 74.01 | 67.53 |
| AT1G80520.1 | Thale cress | nucleus | 72.88 | 67.19 |
| CDY61373 | Canola | cytosol | 63.28 | 55.45 |
| CDY36586 | Canola | nucleus | 62.71 | 54.95 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 41.24 | 47.4 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 41.24 | 41.48 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 41.81 | 38.95 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 40.68 | 38.1 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 37.85 | 38.07 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 38.42 | 35.42 |
| Os04t0644100-01 | Rice | cytosol | 32.2 | 30.32 |
| EES11537 | Sorghum | cytosol | 29.38 | 27.96 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 32.2 | 27.8 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 31.64 | 27.05 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 31.64 | 27.05 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 32.2 | 26.27 |
| Zm00001d046580_P001 | Maize | cytosol | 30.51 | 25.59 |
| Zm00001d036740_P001 | Maize | cytosol | 28.81 | 25.37 |
| Zm00001d002096_P001 | Maize | cytosol | 29.38 | 25.37 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 31.07 | 25.23 |
| EER90109 | Sorghum | nucleus | 31.64 | 25.23 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 15.82 | 24.78 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 31.07 | 23.11 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 25.42 | 22.61 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 26.55 | 22.6 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 26.55 | 22.38 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 27.68 | 21.4 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 27.68 | 21.3 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 26.55 | 20.26 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 26.55 | 20.17 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 27.12 | 19.75 |
| CDX93107 | Canola | cytosol | 26.55 | 18.95 |
| CDY50403 | Canola | cytosol | 26.55 | 18.95 |
| OQU75953 | Sorghum | cytosol | 27.12 | 18.18 |
| OQU80824 | Sorghum | plastid | 18.64 | 16.26 |
| Zm00001d045137_P001 | Maize | plastid | 15.25 | 15.79 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 18.64 | 10.89 |
Protein Annotations
| EnsemblPlants:CDY39968 | EnsemblPlantsGene:GSBRNA2T00068854001 | Gene3D:1.10.150.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001660 | InterPro:SAM | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF1 | PFAM:PF07647 |
| ProteinID:CDY39968 | ProteinID:CDY39968.1 | SUPFAM:SSF47769 | UniParc:UPI0004EDF109 | UniProt:A0A078HT93 | MapMan:35.2 |
Description
BnaC06g40460DBnaC06g40460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT93]
Coordinates
chrLK032461:-:125266..125938
Molecular Weight (calculated)
20772.6 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.669
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMDWFSWLS RTNLEDSLTY EYGLSFSHNE LEYEDIAYFN HEFLQSMGIS IAKHRLEILK LARRHTKPSR SISRVLIAIR KTGKCLSEYV RAMMRREESS
101: QALVVVKGRW SNRNKSNGKE ERLLLTNGTP CRLDSFSSYT GFDHNSSNDD DVYCGKNLQE EEVIIKWDSM FQNLKPT
101: QALVVVKGRW SNRNKSNGKE ERLLLTNGTP CRLDSFSSYT GFDHNSSNDD DVYCGKNLQE EEVIIKWDSM FQNLKPT
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.