CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67952	Canola	cytosol	80.93	83.96
AT1G80520.1	Thale cress	nucleus	75.26	76.04
CDY39968	Canola	cytosol	67.53	74.01
CDX87319	Canola	cytosol	67.01	73.45
CDY36586	Canola	nucleus	63.92	61.39
CDY61373	Canola	cytosol	63.4	60.89
GSMUA_Achr9P26950_001	Banana	cytosol	40.72	51.3
GSMUA_Achr4P09380_001	Banana	cytosol	40.21	41.27
GSMUA_Achr8P14710_001	Banana	cytosol	37.11	40.91
GSMUA_Achr8P17040_001	Banana	cytosol	37.11	40.91
GSMUA_Achr8P25150_001	Banana	cytosol	39.69	40.53
GSMUA_Achr1P09970_001	Banana	cytosol	38.14	38.54
Os04t0644100-01	Rice	cytosol	29.38	30.32
HORVU7Hr1G049610.2	Barley	cytosol, extracellular, plastid	30.41	28.78
EES11537	Sorghum	cytosol	27.32	28.49
TraesCS7B01G432100.1	Wheat	cytosol	29.9	28.02
HORVU7Hr1G115240.1	Barley	cytosol, extracellular, mitochondrion	29.9	28.02
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	29.9	26.73
Zm00001d046580_P001	Maize	cytosol	28.87	26.54
EER90109	Sorghum	nucleus	29.9	26.13
TraesCS7A01G515500.1	Wheat	cytosol, extracellular, mitochondrion	28.87	25.69
Zm00001d036740_P001	Maize	cytosol	26.29	25.37
Zm00001d002096_P001	Maize	cytosol	26.8	25.37
HORVU2Hr1G114860.1	Barley	mitochondrion	14.43	24.78
Os06t0645500-01	Rice	cytosol, nucleus, peroxisome	29.38	23.95
TraesCS2A01G518900.1	Wheat	cytosol	24.74	22.86
TraesCS2B01G547200.1	Wheat	cytosol	23.2	22.61
TraesCS2D01G520300.1	Wheat	cytosol	24.23	22.6
TraesCS7B01G044000.1	Wheat	cytosol	24.74	20.96
TraesCS7A01G141900.1	Wheat	cytosol	24.74	20.87
TraesCS7D01G143100.1	Wheat	cytosol	24.23	20.26
HORVU7Hr1G029260.1	Barley	cytosol	24.23	20.17
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	25.26	20.16
OQU75953	Sorghum	cytosol	26.8	19.7
CDX93107	Canola	cytosol	24.74	19.35
CDY50403	Canola	cytosol	24.74	19.35
Zm00001d045137_P001	Maize	plastid	14.95	16.96
OQU80824	Sorghum	plastid	16.49	15.76
Os06t0179100-00	Rice	cytosol, nucleus	18.56	11.88

Protein Annotations

EnsemblPlants:CDX79380	EnsemblPlantsGene:GSBRNA2T00132085001	Gene3D:1.10.150.50	InterPro:SAM/pointed_sf	PANTHER:PTHR33915	PANTHER:PTHR33915:SF1
ProteinID:CDX79380	ProteinID:CDX79380.1	SUPFAM:SSF47769	UniParc:UPI0004EB6115	MapMan:35.2	:

Description

BnaC06g19230D

Coordinates

chrLK031817:-:1732021..1732694

Molecular Weight (calculated)

22357.8 Da

IEP (calculated)

9.641

GRAVY (calculated)

-0.555

Length

194 amino acids

Sequence
(BLAST)

001: MTMDWFSWLS RTNLEDSLIY EYGLSFSHNE LEFEDIAYFN HEFLQSMGIS IAKHRLEILK LARRDKKASP LTARSISRVL IAIRKTGKCF SEYVRAWIRR
101: EESSRALVVV PRSSGNGRWK GALMKRKKRS VTPSNGNGGG LGKEERLMLT NGTPCRFESF SSSTVLDYGL KEEKDCDVEE EIKWDSMFQN LKPT

Best Arabidopsis Sequence Match ( AT1G80520.1 )
(BLAST)

001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT

Arabidopsis Description

Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.