Factsheet for GSMUA_Achr4P09380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P01370_001
GSMUA_Achr2P04100_001
GSMUA_Achr4P26720_001
GSMUA_Achr6P04140_001
GSMUA_Achr6P06250_001
GSMUA_Achr6P21760_001
GSMUA_Achr6P25070_001
GSMUA_Achr6P29380_001
GSMUA_Achr7P11860_001
GSMUA_Achr8P14320_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	GSMUA_Achr6P21760_001	AT3G20510.1	21798944
AT1G15760.1	GSMUA_Achr6P29380_001	AT3G20510.1	21798944
AT1G15760.1	GSMUA_Achr6P04140_001	AT4G09580.1	21798944
AT1G15760.1	GSMUA_Achr6P06250_001	AT4G09580.1	21798944
AT1G15760.1	GSMUA_Achr7P11860_001	AT4G09580.1	21798944
AT1G15760.1	GSMUA_Achr6P25070_001	AT4G14950.1	21798944
AT1G15760.1	GSMUA_Achr11P...	AT5G43460.1	21798944
AT1G15760.1	GSMUA_Achr1P01370_001	AT5G43460.1	21798944
AT1G15760.1	GSMUA_Achr2P04100_001	AT5G43460.1	21798944
AT1G15760.1	GSMUA_Achr4P26720_001	AT5G43460.1	21798944
AT1G15760.1	GSMUA_Achr8P14320_001	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P26950_001	Banana	cytosol	44.97	55.19
GSMUA_Achr8P25150_001	Banana	cytosol	53.44	53.16
GSMUA_Achr1P09970_001	Banana	cytosol	52.38	51.56
PGSC0003DMT400084778	Potato	nucleus	42.86	43.32
Solyc03g117340.1.1	Tomato	cytosol	40.74	42.54
KRH23610	Soybean	cytosol	42.86	42.19
PGSC0003DMT400073435	Potato	cytosol	42.33	41.88
GSMUA_Achr8P17040_001	Banana	cytosol	38.62	41.48
KRH09696	Soybean	cytosol	42.86	41.33
Solyc06g068310.1.1	Tomato	cytosol	41.8	40.93
CDY39968	Canola	cytosol	38.1	40.68
PGSC0003DMT400073434	Potato	cytosol	28.57	40.3
CDX79380	Canola	cytosol	41.27	40.21
CDX87319	Canola	cytosol	37.57	40.11
Bra035174.1-P	Field mustard	cytosol	37.04	39.55
GSMUA_Achr8P14710_001	Banana	cytosol	36.51	39.2
CDX67952	Canola	cytosol	38.62	39.04
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	48.15	38.72
Bra003571.1-P	Field mustard	cytosol	38.1	38.5
AT1G80520.1	Thale cress	nucleus	38.1	37.5
KRH47406	Soybean	cytosol	40.21	37.44
Solyc03g117310.1.1	Tomato	cytosol	39.15	35.24
AT1G15760.1	Thale cress	nucleus	37.57	35.15
PGSC0003DMT400036834	Potato	nucleus	38.62	34.76
KRH44503	Soybean	cytosol	39.15	34.1
Bra026110.1-P	Field mustard	cytosol	35.45	33.17
CDY36586	Canola	nucleus	35.45	33.17
CDY61373	Canola	cytosol	35.45	33.17
EES11537	Sorghum	cytosol	28.57	29.03
VIT_11s0118g00550.t01	Wine grape	cytosol	35.98	27.09
Os04t0644100-01	Rice	cytosol	25.93	26.06
HORVU7Hr1G049610.2	Barley	cytosol, extracellular, plastid	28.04	25.85
HORVU2Hr1G114860.1	Barley	mitochondrion	15.34	25.66
HORVU7Hr1G115240.1	Barley	cytosol, extracellular, mitochondrion	28.04	25.6
PGSC0003DMT400078859	Potato	cytosol	33.86	25.3
EER90109	Sorghum	nucleus	29.63	25.23
TraesCS7B01G432100.1	Wheat	cytosol	27.51	25.12
Solyc07g007350.1.1	Tomato	cytosol	33.86	25.1
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	28.57	24.88
Zm00001d002096_P001	Maize	cytosol	26.98	24.88
Zm00001d036740_P001	Maize	cytosol	26.45	24.88
Zm00001d046580_P001	Maize	cytosol	27.51	24.64
Os06t0645500-01	Rice	cytosol, nucleus, peroxisome	30.16	23.95
TraesCS7A01G515500.1	Wheat	cytosol, extracellular, mitochondrion	27.51	23.85
KRH20227	Soybean	cytosol	37.04	23.73
TraesCS2D01G520300.1	Wheat	cytosol	25.93	23.56
TraesCS2B01G547200.1	Wheat	cytosol	24.34	23.12
KRH12842	Soybean	cytosol, nucleus, plastid	34.39	22.89
TraesCS2A01G518900.1	Wheat	cytosol	25.4	22.86
KRH03583	Soybean	nucleus	37.04	22.01
KRH37823	Soybean	nucleus	33.86	21.84
TraesCS7A01G141900.1	Wheat	cytosol	26.45	21.74
TraesCS7B01G044000.1	Wheat	cytosol	25.93	21.4
TraesCS7D01G143100.1	Wheat	cytosol	25.93	21.12
AT2G12462.1	Thale cress	cytosol	27.51	20.88
HORVU7Hr1G029260.1	Barley	cytosol	25.4	20.6
Bra013153.1-P	Field mustard	cytosol	25.4	19.35
CDX93107	Canola	cytosol	25.4	19.35
CDY50403	Canola	cytosol	25.4	19.35
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	24.87	19.34
OQU75953	Sorghum	cytosol	25.4	18.18
OQU80824	Sorghum	plastid	17.99	16.75
Zm00001d045137_P001	Maize	plastid	13.76	15.2
Os06t0179100-00	Rice	cytosol, nucleus	20.63	12.87

Protein Annotations

EnsemblPlants:GSMUA_Achr4P09380_001	EnsemblPlants:GSMUA_Achr4T09380_001	EnsemblPlantsGene:GSMUA_Achr4G09380_001	Gene3D:1.10.150.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001660	InterPro:SAM	InterPro:SAM/pointed_sf	PANTHER:PTHR33915	PANTHER:PTHR33915:SF1
PFAM:PF07647	SEG:seg	SUPFAM:SSF47769	UniParc:UPI0002952C00	UniProt:M0SMF5	MapMan:35.2

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G09380_001]

Coordinates

chr4:-:6820097..6820666

Molecular Weight (calculated)

21243.7 Da

IEP (calculated)

10.427

GRAVY (calculated)

-0.441

Length

189 amino acids

Sequence
(BLAST)

001: MDWHSWLSKS CLEPSLVYDY GLLFMNNELE EDDIAHFDHD FLQSMGVSIA KHRLEILKLA KNSRRASPLP VAKLATVIRK SKTRLAKYIR TLARSDGPAI
101: LVVPKTACGD CWRGATSRRK TKLVILKQGR LMITDRGMRI ADLPSRSHSG TPMGRSRREN SNAAAADGCW ETADGATRWD SMFQNLKPT

Best Arabidopsis Sequence Match ( AT1G80520.1 )
(BLAST)

001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT

Arabidopsis Description

Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.