Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g068310.1.1 | Tomato | cytosol | 88.48 | 87.56 |
| PGSC0003DMT400084778 | Potato | nucleus | 64.92 | 66.31 |
| KRH23610 | Soybean | cytosol | 53.93 | 53.65 |
| KRH09696 | Soybean | cytosol | 53.93 | 52.55 |
| PGSC0003DMT400073434 | Potato | cytosol | 33.51 | 47.76 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 37.17 | 46.1 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 56.54 | 45.96 |
| KRH47406 | Soybean | cytosol | 48.69 | 45.81 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 41.88 | 42.33 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 38.74 | 42.05 |
| PGSC0003DMT400036834 | Potato | nucleus | 46.07 | 41.9 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 40.84 | 41.05 |
| KRH44503 | Soybean | cytosol | 45.55 | 40.09 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 35.6 | 38.64 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 38.22 | 38.02 |
| PGSC0003DMT400078859 | Potato | cytosol | 40.84 | 30.83 |
| EES11537 | Sorghum | cytosol | 29.84 | 30.65 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 30.37 | 28.29 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 30.37 | 28.02 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 30.37 | 28.02 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 30.89 | 27.19 |
| Os04t0644100-01 | Rice | cytosol | 26.7 | 27.13 |
| EER90109 | Sorghum | nucleus | 30.89 | 26.58 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 15.71 | 26.55 |
| Zm00001d002096_P001 | Maize | cytosol | 28.27 | 26.34 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 29.84 | 26.15 |
| Zm00001d036740_P001 | Maize | cytosol | 27.23 | 25.87 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 31.94 | 25.63 |
| Zm00001d046580_P001 | Maize | cytosol | 28.27 | 25.59 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 25.13 | 22.86 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 23.56 | 22.61 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 24.61 | 22.6 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 25.13 | 20.69 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 24.08 | 20.09 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 24.08 | 19.74 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 24.61 | 19.34 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 23.04 | 19.13 |
| OQU75953 | Sorghum | cytosol | 25.65 | 18.56 |
| OQU80824 | Sorghum | plastid | 16.23 | 15.27 |
| Zm00001d045137_P001 | Maize | plastid | 13.09 | 14.62 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 18.85 | 11.88 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073435 | EnsemblPlantsGene:PGSC0003DMG400028527 | EntrezGene:102602753 | Gene3D:1.10.150.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001660 | InterPro:SAM | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF1 |
| PFAM:PF07647 | PGSC:PGSC0003DMG400028527 | RefSeq:XP_006356232.1 | SEG:seg | SUPFAM:SSF47769 | UniParc:UPI000295DEF7 |
| UniProt:M1CS01 | MapMan:35.2 | : | : | : | : |
Description
Jp18 [Source:PGSC_GENE;Acc:PGSC0003DMG400028527]
Coordinates
chr6:+:49897660..49898421
Molecular Weight (calculated)
22462.2 Da
IEP (calculated)
10.382
GRAVY (calculated)
-0.471
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWFSWLSKT ELEPSLVYEY GLAFAHNELE EDDIAYFNHE FLQSMGISIA KHRLEILKLA KKERGNVPNS MSKFLLVMKR TKKRFSKYFR TWIHRDESAL
101: ALVSRRSYSS RIWKRTKMMK RNKSVVAPAK QSSRSSTLLL TNGSPIFMSS SLRMDSFSSV MVQEKMEIDY WGSSVVEEIK WDSMFQNMKP T
101: ALVSRRSYSS RIWKRTKMMK RNKSVVAPAK QSSRSSTLLL TNGSPIFMSS SLRMDSFSSV MVQEKMEIDY WGSSVVEEIK WDSMFQNMKP T
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.