Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073435 | Potato | cytosol | 87.56 | 88.48 |
| Solyc03g117340.1.1 | Tomato | cytosol | 62.69 | 66.85 |
| KRH23610 | Soybean | cytosol | 53.37 | 53.65 |
| KRH09696 | Soybean | cytosol | 53.89 | 53.06 |
| KRH47406 | Soybean | cytosol | 49.74 | 47.29 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 56.48 | 46.38 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 35.75 | 44.81 |
| Solyc03g117310.1.1 | Tomato | cytosol | 47.67 | 43.81 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 40.93 | 41.8 |
| KRH44503 | Soybean | cytosol | 46.63 | 41.47 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 37.31 | 40.91 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 39.9 | 40.53 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 35.23 | 38.64 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 37.82 | 38.02 |
| EES11537 | Sorghum | cytosol | 29.53 | 30.65 |
| Solyc07g007350.1.1 | Tomato | cytosol | 38.34 | 29.02 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 29.53 | 27.8 |
| Os04t0644100-01 | Rice | cytosol | 26.42 | 27.13 |
| EER90109 | Sorghum | nucleus | 30.57 | 26.58 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 28.5 | 26.57 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 28.5 | 26.57 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 15.54 | 26.55 |
| Zm00001d002096_P001 | Maize | cytosol | 27.98 | 26.34 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 29.53 | 26.27 |
| Zm00001d036740_P001 | Maize | cytosol | 26.94 | 25.87 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 31.61 | 25.63 |
| Zm00001d046580_P001 | Maize | cytosol | 27.46 | 25.12 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 27.98 | 24.77 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 25.39 | 23.33 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 23.83 | 23.12 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 24.87 | 23.08 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 23.83 | 19.83 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 23.83 | 19.74 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 23.32 | 19.65 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 23.83 | 18.93 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 22.28 | 18.7 |
| OQU75953 | Sorghum | cytosol | 24.35 | 17.8 |
| Zm00001d045137_P001 | Maize | plastid | 15.03 | 16.96 |
| OQU80824 | Sorghum | plastid | 16.06 | 15.27 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 18.65 | 11.88 |
Protein Annotations
| EnsemblPlants:Solyc06g068310.1.1 | EnsemblPlantsGene:Solyc06g068310.1 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF1 |
| SEG:seg | SUPFAM:SSF47769 | UniParc:UPI0002766395 | UniProt:K4C806 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6:+:42318879..42319460
Molecular Weight (calculated)
22584.3 Da
IEP (calculated)
10.203
GRAVY (calculated)
-0.460
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWFSWLSKT ELEPSLVYEY GLAFAHNELE QDDIAYFNHE FLQSMGISIA KHRLEILKLA KKERGNVPNS MSKFLLVMKR TKKRFSKYFR TWIHRDESAL
101: ALVSRRSYSS RIWKRTKMMK RNKSVVAPAK HTSSTTLLLT NGSPIFMSSS LRMDSFSSAM VHEKMEVDCG DYWGSSVVEE IKWDSMFQNM KPT
101: ALVSRRSYSS RIWKRTKMMK RNKSVVAPAK HTSSTTLLLT NGSPIFMSSS LRMDSFSSAM VHEKMEVDCG DYWGSSVVEE IKWDSMFQNM KPT
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.