Factsheet for Solyc03g117310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036834	Potato	nucleus	94.29	94.29
Solyc06g068310.1.1	Tomato	cytosol	43.81	47.67
Solyc03g117340.1.1	Tomato	cytosol	40.95	47.51
GSMUA_Achr9P26950_001	Banana	cytosol	32.38	44.16
GSMUA_Achr1P09970_001	Banana	cytosol	40.0	43.75
GSMUA_Achr8P14710_001	Banana	cytosol	32.86	39.2
GSMUA_Achr4P09380_001	Banana	cytosol	35.24	39.15
GSMUA_Achr8P25150_001	Banana	cytosol	33.33	36.84
GSMUA_Achr8P17040_001	Banana	cytosol	29.52	35.23
EES11537	Sorghum	cytosol	27.14	30.65
Os04t0644100-01	Rice	cytosol	25.24	28.19
Solyc07g007350.1.1	Tomato	cytosol	33.33	27.45
Zm00001d002096_P001	Maize	cytosol	25.24	25.85
TraesCS2B01G547200.1	Wheat	cytosol	23.33	24.62
HORVU7Hr1G115240.1	Barley	cytosol, extracellular, mitochondrion	23.33	23.67
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	24.29	23.5
HORVU7Hr1G049610.2	Barley	cytosol, extracellular, plastid	22.86	23.41
TraesCS2D01G520300.1	Wheat	cytosol	22.86	23.08
EER90109	Sorghum	nucleus	24.29	22.97
TraesCS2A01G518900.1	Wheat	cytosol	22.86	22.86
Zm00001d046580_P001	Maize	cytosol	22.86	22.75
TraesCS7B01G432100.1	Wheat	cytosol	22.38	22.71
TraesCS7A01G515500.1	Wheat	cytosol, extracellular, mitochondrion	23.33	22.48
Zm00001d036740_P001	Maize	cytosol	21.43	22.39
HORVU2Hr1G114860.1	Barley	mitochondrion	11.43	21.24
TraesCS7B01G044000.1	Wheat	cytosol	22.86	20.96
TraesCS7D01G143100.1	Wheat	cytosol	22.86	20.69
Os06t0645500-01	Rice	cytosol, nucleus, peroxisome	23.33	20.59
TraesCS7A01G141900.1	Wheat	cytosol	22.38	20.43
HORVU7Hr1G029260.1	Barley	cytosol	22.38	20.17
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	22.38	19.34
OQU75953	Sorghum	cytosol	22.38	17.8
Zm00001d045137_P001	Maize	plastid	13.81	16.96
OQU80824	Sorghum	plastid	12.86	13.3
Os06t0179100-00	Rice	cytosol, nucleus	18.57	12.87

Protein Annotations

EnsemblPlants:Solyc03g117310.1.1	EnsemblPlantsGene:Solyc03g117310.1	Gene3D:1.10.150.50	InterPro:SAM/pointed_sf	PANTHER:PTHR33915	PANTHER:PTHR33915:SF1
SEG:seg	SUPFAM:SSF47769	UniParc:UPI00027674EE	UniProt:K4BLN3	MapMan:35.2	:

Description

No Description!

Coordinates

chr3:-:66478827..66479459

Molecular Weight (calculated)

24284.7 Da

IEP (calculated)

9.882

GRAVY (calculated)

-0.634

Length

210 amino acids

Sequence
(BLAST)

001: MDWFSWLSNS SLDPSLLYDY AITFAHNQLD QDDIQYFNHE FLQSMGISIA KHRLEILKLA TKEKGRRSSR KHIFWLVVAI RQAKQHFAKR FSTWTRRSDS
101: SALLPLRNYS SRWKASMLKR NKRLTAAKQE RPVMQSTNAT TNQGRLMMLT NGSPKLMIDS SDAWISSPSS STAEDFRDDE DMDGVDGGNW PTVAIEEIKW
201: DAMFQDLKPT

Best Arabidopsis Sequence Match ( AT1G80520.1 )
(BLAST)

001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT

Arabidopsis Description

Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.