CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035174.1-P	Field mustard	cytosol	99.44	99.44
CDY39968	Canola	cytosol	97.18	97.18
CDX67952	Canola	cytosol	72.32	68.45
CDX79380	Canola	cytosol	73.45	67.01
AT1G80520.1	Thale cress	nucleus	72.32	66.67
CDY61373	Canola	cytosol	62.71	54.95
CDY36586	Canola	nucleus	62.15	54.46
GSMUA_Achr9P26950_001	Banana	cytosol	40.68	46.75
GSMUA_Achr8P14710_001	Banana	cytosol	41.81	42.05
GSMUA_Achr8P25150_001	Banana	cytosol	41.24	38.42
GSMUA_Achr4P09380_001	Banana	cytosol	40.11	37.57
GSMUA_Achr8P17040_001	Banana	cytosol	37.29	37.5
GSMUA_Achr1P09970_001	Banana	cytosol	37.85	34.9
Os04t0644100-01	Rice	cytosol	32.2	30.32
HORVU7Hr1G049610.2	Barley	cytosol, extracellular, plastid	32.77	28.29
EES11537	Sorghum	cytosol	29.38	27.96
TraesCS7B01G432100.1	Wheat	cytosol	32.2	27.54
HORVU7Hr1G115240.1	Barley	cytosol, extracellular, mitochondrion	32.2	27.54
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	32.77	26.73
TraesCS7A01G515500.1	Wheat	cytosol, extracellular, mitochondrion	31.64	25.69
Zm00001d046580_P001	Maize	cytosol	30.51	25.59
Zm00001d036740_P001	Maize	cytosol	28.81	25.37
Zm00001d002096_P001	Maize	cytosol	29.38	25.37
EER90109	Sorghum	nucleus	31.64	25.23
HORVU2Hr1G114860.1	Barley	mitochondrion	15.82	24.78
Os06t0645500-01	Rice	cytosol, nucleus, peroxisome	31.07	23.11
TraesCS2B01G547200.1	Wheat	cytosol	25.42	22.61
TraesCS2D01G520300.1	Wheat	cytosol	26.55	22.6
TraesCS2A01G518900.1	Wheat	cytosol	26.55	22.38
TraesCS7B01G044000.1	Wheat	cytosol	27.68	21.4
TraesCS7A01G141900.1	Wheat	cytosol	27.68	21.3
TraesCS7D01G143100.1	Wheat	cytosol	26.55	20.26
HORVU7Hr1G029260.1	Barley	cytosol	26.55	20.17
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	27.12	19.75
CDX93107	Canola	cytosol	26.55	18.95
CDY50403	Canola	cytosol	26.55	18.95
OQU75953	Sorghum	cytosol	27.12	18.18
Zm00001d045137_P001	Maize	plastid	15.25	15.79
OQU80824	Sorghum	plastid	18.08	15.76
Os06t0179100-00	Rice	cytosol, nucleus	18.64	10.89

Protein Annotations

EnsemblPlants:CDX87319	EnsemblPlantsGene:GSBRNA2T00146286001	Gene3D:1.10.150.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001660	InterPro:SAM	InterPro:SAM/pointed_sf	PANTHER:PTHR33915	PANTHER:PTHR33915:SF1	PFAM:PF07647
ProteinID:CDX87319	ProteinID:CDX87319.1	SUPFAM:SSF47769	UniParc:UPI0004EE579E	MapMan:35.2	:

Description

BnaA07g35540D

Coordinates

chrLK031850:+:145745..146417

Molecular Weight (calculated)

20713.6 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.627

Length

177 amino acids

Sequence
(BLAST)

001: MTMDWFSWLS RTNLEDSLTY EYGLSFSHNE LEYEDIAYFN HEFLQSMGIS IAKHRLEILK LARRHTKPSR SISRMLIAIR KTGKCLSEYV GAMMRREESS
101: QALVVVKGRW SKRNKSNGKE ERLLLTNGTP CRLDSFSSYT GFDHYSSNDD DVYCGKNLQE EEVIIKWDSM FQNLKPT

Best Arabidopsis Sequence Match ( AT1G15760.1 )
(BLAST)

001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT

Arabidopsis Description

At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.