Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28967 | Canola | cytosol | 99.51 | 100.0 |
| CDY40564 | Canola | cytosol | 99.51 | 100.0 |
| CDY43436 | Canola | cytosol | 99.51 | 100.0 |
| CDY33521 | Canola | cytosol | 98.52 | 99.01 |
| CDX77748 | Canola | cytosol | 98.52 | 99.01 |
| AT5G47200.1 | Thale cress | cytosol | 98.03 | 98.51 |
| CDX90468 | Canola | cytosol | 97.54 | 98.02 |
| CDX76566 | Canola | cytosol | 97.04 | 97.52 |
| CDY65880 | Canola | cytosol | 97.04 | 97.52 |
| CDX85225 | Canola | cytosol | 72.91 | 93.67 |
| CDY52557 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 94.58 | 90.14 |
| CDY38404 | Canola | endoplasmic reticulum | 94.58 | 87.67 |
| CDY09621 | Canola | cytosol | 95.57 | 79.84 |
| CDY47919 | Canola | vacuole | 74.38 | 73.3 |
| CDX73855 | Canola | cytosol | 73.89 | 72.82 |
| CDY56593 | Canola | cytosol | 73.89 | 72.82 |
| CDY38055 | Canola | cytosol | 83.74 | 71.73 |
| CDY72056 | Canola | cytosol | 40.89 | 66.4 |
| CDX68365 | Canola | cytosol | 61.08 | 57.41 |
| CDY71506 | Canola | cytosol | 61.08 | 57.41 |
| CDY30926 | Canola | cytosol | 61.08 | 57.41 |
| CDX77855 | Canola | cytosol | 60.59 | 56.94 |
| CDX86045 | Canola | cytosol | 60.59 | 56.94 |
| CDY31592 | Canola | cytosol | 60.1 | 56.48 |
| CDX88726 | Canola | cytosol | 59.11 | 55.56 |
| CDX88725 | Canola | cytosol | 59.11 | 55.56 |
| CDY11256 | Canola | cytosol | 58.62 | 54.84 |
| CDY09249 | Canola | cytosol | 58.13 | 54.63 |
| CDY41572 | Canola | cytosol | 58.62 | 54.59 |
| CDX80224 | Canola | cytosol | 57.14 | 54.46 |
| CDY54609 | Canola | cytosol | 57.64 | 53.67 |
| CDX80871 | Canola | cytosol | 58.62 | 53.36 |
| CDY34032 | Canola | cytosol | 34.48 | 47.62 |
| CDY70243 | Canola | cytosol | 34.48 | 46.05 |
| CDX72559 | Canola | cytosol | 47.78 | 45.97 |
| CDY07577 | Canola | cytosol | 59.61 | 45.32 |
| CDX75535 | Canola | cytosol | 46.8 | 45.02 |
| CDX69177 | Canola | cytosol | 46.8 | 45.02 |
| CDY52746 | Canola | cytosol | 59.61 | 44.98 |
| CDY50126 | Canola | cytosol | 46.31 | 44.76 |
| CDY58166 | Canola | cytosol | 46.31 | 44.76 |
| CDY47039 | Canola | plasma membrane | 46.31 | 44.55 |
| CDY09641 | Canola | cytosol | 45.81 | 44.08 |
| CDY42961 | Canola | cytosol | 45.81 | 44.08 |
| CDY35596 | Canola | cytosol | 45.81 | 44.08 |
| CDX94925 | Canola | cytosol | 35.47 | 43.9 |
| CDX99131 | Canola | cytosol | 60.59 | 39.94 |
Protein Annotations
| MapMan:22.8.1.4 | Gene3D:3.40.50.300 | GO:A0A078JR64 | UniProt:A0A078JR64 | EnsemblPlants:CDY67887 | ProteinID:CDY67887 |
| ProteinID:CDY67887.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00067625001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF666 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI00006C5FFB | : | : | : | : | : |
Description
BnaCnng56810DBnaCnng56810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR64]
Coordinates
chrLK036620:-:2507..4787
Molecular Weight (calculated)
22473.5 Da
IEP (calculated)
4.850
GRAVY (calculated)
-0.353
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAQAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPSGG AKPPTVQIRG QPVNQQQSGC
201: CSS
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAQAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPSGG AKPPTVQIRG QPVNQQQSGC
201: CSS
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
Arabidopsis Description
RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.