CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023585.1-P	Field mustard	nucleus	78.73	98.02
CDX70721	Canola	cytosol	73.02	88.12
CDX78713	Canola	cytosol	73.02	88.12
AT5G16840.2	Thale cress	nucleus	70.48	85.38
CDX69415	Canola	cytosol	70.16	85.0
CDY16974	Canola	plastid	74.6	73.9
CDY38083	Canola	nucleus	85.71	64.44
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	47.3	61.07
Os06t0112400-01	Rice	plasma membrane	48.89	59.0
EER89059	Sorghum	cytosol	49.84	58.36
HORVU7Hr1G003710.1	Barley	cytosol	48.25	57.79
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	50.16	57.04
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	49.84	56.47
TraesCS7D01G027100.1	Wheat	plastid	47.62	56.39
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	47.62	56.39
Solyc03g097110.2.1	Tomato	nucleus	49.52	56.12
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	48.89	55.4
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	48.57	55.04
CDY01476	Canola	cytosol	24.76	54.55
TraesCS7A01G030900.2	Wheat	plastid	47.62	47.62
KRH24024	Soybean	nucleus	43.81	47.26
CDX78795	Canola	nucleus	45.08	46.86
CDY60787	Canola	nucleus	44.44	46.2
Zm00001d035920_P002	Maize	extracellular, vacuole	50.16	45.66
CDY01477	Canola	cytosol	43.81	45.54
CDX90453	Canola	cytosol	44.13	44.98
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	39.68	44.96
PGSC0003DMT400069547	Potato	nucleus	47.3	43.82
GSMUA_Achr8P14700_001	Banana	plastid	41.59	42.95
CDY01473	Canola	nucleus	26.67	42.42
Zm00001d002475_P001	Maize	extracellular	42.22	42.36
Zm00001d054082_P001	Maize	cytosol	37.78	42.05
CDX90455	Canola	cytosol	27.62	41.83
EES12769	Sorghum	cytosol	41.59	41.72
Os04t0594400-01	Rice	plasma membrane	41.59	41.72
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.81	41.44
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	41.27	41.4
CDY60084	Canola	cytosol, nucleus, plastid	9.84	40.79
Solyc06g072770.2.1	Tomato	nucleus	46.98	40.66
TraesCS2D01G444000.1	Wheat	extracellular	40.63	40.63
TraesCS2A01G445100.1	Wheat	extracellular	40.63	40.38
CDY38176	Canola	cytosol	33.65	40.3
TraesCS2B01G466100.1	Wheat	extracellular	40.32	40.06
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	42.54	40.0
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	33.33	39.47
CDY62016	Canola	nucleus	29.21	39.32
CDY49093	Canola	cytosol	30.48	39.18
CDX96860	Canola	nucleus	29.52	38.11
Zm00001d026150_P001	Maize	cytosol	28.89	37.92
Zm00001d031612_P001	Maize	cytosol	28.89	37.92
CDX84035	Canola	nucleus	29.21	37.7
CDY01872	Canola	cytosol, plastid	33.97	37.68
Zm00001d046992_P001	Maize	cytosol	39.05	37.61
Os04t0624800-01	Rice	nucleus	41.9	35.11
CDX74287	Canola	cytosol	26.67	33.33
OQU85574	Sorghum	nucleus	41.27	33.25
CDX91958	Canola	cytosol, nucleus, plastid	26.35	32.94
TraesCS6D01G249000.1	Wheat	nucleus, plastid	38.41	31.68
Zm00001d051524_P002	Maize	nucleus	40.32	31.51
TraesCS6A01G265600.1	Wheat	extracellular	39.37	31.23
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	31.75	30.77
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	38.41	30.48
Zm00001d014267_P001	Maize	nucleus	40.0	29.86
Zm00001d046215_P001	Maize	cytosol	28.25	27.81

Protein Annotations

EnsemblPlants:CDX85485	EnsemblPlantsGene:GSBRNA2T00143185001	Gene3D:3.30.70.330	GO:A0A078D8E6	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF6	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX85485	ProteinID:CDX85485.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDE919	MapMan:35.1	:

Description

BnaA02g03280D

Coordinates

chrLK031842:-:315082..318745

Molecular Weight (calculated)

33604.6 Da

IEP (calculated)

6.374

GRAVY (calculated)

-0.190

Length

315 amino acids

Sequence
(BLAST)

001: MLVNNQIFEW IFCSAFVSNT FKRAFQDALP LVLYTHQSRS AFSIESALQS KVTTSLPQLR RSTSMAIRSV KVGNLSSGAT EHDIKEFFSF SGEVESIDIQ
101: RDEHSAYVTF KDPQGAETAV LLSGASIADQ SVVIEMAPNY TPPAAPHAET QSGGVAESVV QKAEDVVSTM LAKGFILGKD AVGKAKAFDE KLGFTSTATA
201: GVASIDQKIG LSQKITAGTS LVTEKIKGVD QSFQVTERTK SAFATAEQTV SSAGTAVMKN RFVLTGVSWA AGAFNRVAKA AGEVGQKTKE KVEAEQPPQP
301: SQSEQQPPEG YSPLH

Best Arabidopsis Sequence Match ( AT5G16840.3 )
(BLAST)

001: MAVRSVKVGN LSSGATEHDI KEFFSFSGEV ESIDIQSNEH SAYVTFKETQ GAETAVLLSG ASIADQSVII ELAPNYSPPA APHAETQSSG AESVVQKAED
101: VVSSMLAKGF ILGKDAVGKA KAFDEKHGFT STATAGVASL DQKIGLSQKL TAGTSLVNEK IKAVDQNFQV TERTKSVYAA AEQTVSSAGS AVMKNRYVLT
201: GVSWAAGAFN RVAQAAGEVG QKTKEKVEAE QPSQPAQSQQ QLPEGYSPIH SSEYSKN

Arabidopsis Description

BPA1binding partner of acd11 1 [Source:TAIR;Acc:AT5G16840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.