Factsheet for PGSC0003DMT400069547

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072770.2.1	Tomato	nucleus	95.88	89.56
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	57.06	69.78
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	54.41	66.79
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	47.06	65.57
PGSC0003DMT400038377	Potato	cytosol	52.06	62.99
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	51.47	62.95
Os06t0112400-01	Rice	plasma membrane	46.47	60.54
EER89059	Sorghum	cytosol	47.06	59.48
HORVU7Hr1G003710.1	Barley	cytosol	45.88	59.32
Bra006373.1-P	Field mustard	cytosol	45.29	59.0
CDX78713	Canola	cytosol	45.29	59.0
CDX70721	Canola	cytosol	45.29	59.0
AT5G16840.2	Thale cress	nucleus	45.0	58.85
TraesCS7D01G027100.1	Wheat	plastid	45.88	58.65
Bra023585.1-P	Field mustard	nucleus	43.53	58.5
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	45.59	58.27
CDX69415	Canola	cytosol	44.41	58.08
Bra008589.1-P	Field mustard	cytosol	44.71	58.02
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	45.59	55.76
KRH24024	Soybean	nucleus	43.82	51.03
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	41.18	50.36
TraesCS7A01G030900.2	Wheat	plastid	45.88	49.52
GSMUA_Achr8P14700_001	Banana	plastid	43.82	48.85
CDY16974	Canola	plastid	45.0	48.11
EES12769	Sorghum	cytosol	44.12	47.77
Zm00001d002475_P001	Maize	extracellular	44.12	47.77
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	44.12	47.77
Os04t0594400-01	Rice	plasma membrane	43.82	47.45
CDX85485	Canola	plastid	43.82	47.3
Zm00001d035920_P002	Maize	extracellular, vacuole	45.88	45.09
TraesCS2D01G444000.1	Wheat	extracellular	41.47	44.76
TraesCS2A01G445100.1	Wheat	extracellular	41.47	44.48
Zm00001d054082_P001	Maize	cytosol	36.76	44.17
TraesCS2B01G466100.1	Wheat	extracellular	41.18	44.16
Zm00001d026150_P001	Maize	cytosol	30.0	42.5
Zm00001d031612_P001	Maize	cytosol	30.0	42.5
PGSC0003DMT400018578	Potato	cytosol	33.53	41.45
Zm00001d046992_P001	Maize	cytosol	37.94	39.45
Os04t0624800-01	Rice	nucleus	42.35	38.3
TraesCS6D01G249000.1	Wheat	nucleus, plastid	42.94	38.22
TraesCS6A01G265600.1	Wheat	extracellular	42.94	36.78
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	34.71	36.31
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	42.35	36.27
CDY38083	Canola	nucleus	44.41	36.04
OQU85574	Sorghum	nucleus	40.59	35.29
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	24.71	34.29
PGSC0003DMT400017749	Potato	cytosol	25.59	34.12
Zm00001d051524_P002	Maize	nucleus	40.0	33.75
Zm00001d014267_P001	Maize	nucleus	39.12	31.52
Zm00001d046215_P001	Maize	cytosol	26.76	28.44

Protein Annotations

EntrezGene:102601596	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1CKN2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400027035	PGSC:PGSC0003DMG400027035	EnsemblPlants:PGSC0003DMT400069547	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF6
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002967B3A	RefSeq:XP_006347477.1
SEG:seg	:	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027035]

Coordinates

chr6:+:53466406..53470281

Molecular Weight (calculated)

35676.7 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.405

Length

340 amino acids

Sequence
(BLAST)

001: MTVKTVQVNN VSLGAKEQDI KEFFSFSGDI EYLEMKGESE RSQVAYVTFK DPQSAETAVL LSGATIVDQS ISIVLAPEYK LPPTASVSPV PTESTNAPAA
101: GSAIQKAEDV VSSMLAKGFI LGKDAVGKAK ALDERHKITS TTSATVASLD QKYGLSEKIT TGATIVNHKV KEMDQKFQVS EKSKSAFAAA EQTVSNAGSA
201: IMKNRYALTG VTWAAGALSR VTKAAGEVGQ KTKEKLAEEE RRTFTKGHAQ ENTATSSKGN VQQQAADSAK GDVQELAAAS AKGDVQELAA ASAKGHVQEH
301: AATSAKSDVQ EVAATSAKQE HPESQTGIEE STNLSLPPKA

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.