Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051524_P002 | Maize | nucleus | 95.94 | 76.18 |
| Zm00001d014267_P001 | Maize | nucleus | 96.56 | 73.22 |
| Zm00001d054082_P001 | Maize | cytosol | 64.38 | 72.79 |
| OQU85574 | Sorghum | nucleus | 83.75 | 68.54 |
| Zm00001d046992_P001 | Maize | cytosol | 68.75 | 67.28 |
| Os04t0624800-01 | Rice | nucleus | 58.75 | 50.0 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 58.75 | 49.21 |
| Zm00001d031612_P001 | Maize | cytosol | 35.62 | 47.5 |
| Zm00001d026150_P001 | Maize | cytosol | 35.62 | 47.5 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 58.44 | 47.1 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 57.81 | 46.6 |
| CDY01473 | Canola | nucleus | 25.94 | 41.92 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 38.75 | 39.49 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 34.06 | 39.21 |
| Solyc03g097110.2.1 | Tomato | nucleus | 34.06 | 39.21 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 33.12 | 38.27 |
| Zm00001d002475_P001 | Maize | extracellular | 36.88 | 37.58 |
| Bra012647.1-P | Field mustard | cytosol | 24.38 | 37.5 |
| CDX90455 | Canola | cytosol | 24.38 | 37.5 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 32.5 | 36.88 |
| Bra006373.1-P | Field mustard | cytosol | 29.69 | 36.4 |
| CDX78713 | Canola | cytosol | 29.69 | 36.4 |
| CDX70721 | Canola | cytosol | 29.69 | 36.4 |
| Solyc08g076530.2.1 | Tomato | plastid | 31.88 | 36.3 |
| PGSC0003DMT400038377 | Potato | cytosol | 31.88 | 36.3 |
| AT5G16840.2 | Thale cress | nucleus | 29.38 | 36.15 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 33.75 | 35.41 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 35.94 | 35.38 |
| Bra023585.1-P | Field mustard | nucleus | 27.81 | 35.18 |
| KRH74377 | Soybean | endoplasmic reticulum | 30.62 | 35.13 |
| KRH39571 | Soybean | nucleus | 30.62 | 35.0 |
| Bra008589.1-P | Field mustard | cytosol | 28.44 | 34.73 |
| CDX69415 | Canola | cytosol | 28.12 | 34.62 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 30.0 | 34.53 |
| CDY01477 | Canola | cytosol | 32.5 | 34.32 |
| KRH24024 | Soybean | nucleus | 31.25 | 34.25 |
| Bra040177.1-P | Field mustard | nucleus | 32.19 | 34.11 |
| Bra012646.1-P | Field mustard | nucleus | 32.81 | 33.65 |
| CDX90453 | Canola | cytosol | 32.19 | 33.33 |
| CDX78795 | Canola | nucleus | 31.56 | 33.33 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 28.75 | 33.09 |
| CDY60787 | Canola | nucleus | 31.25 | 33.0 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 31.88 | 32.59 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 28.75 | 32.51 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 28.44 | 32.16 |
| AT5G46870.1 | Thale cress | nucleus | 29.38 | 31.86 |
| CDY01476 | Canola | cytosol | 14.06 | 31.47 |
| CDY16974 | Canola | plastid | 28.44 | 28.62 |
| CDX85485 | Canola | plastid | 27.81 | 28.25 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.06 | 27.93 |
| Bra024988.1-P | Field mustard | vacuole | 28.75 | 27.63 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 28.75 | 27.46 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 29.38 | 27.17 |
| PGSC0003DMT400069547 | Potato | nucleus | 28.44 | 26.76 |
| Solyc06g072770.2.1 | Tomato | nucleus | 27.19 | 23.9 |
| Zm00001d013271_P003 | Maize | cytosol | 20.31 | 23.13 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 21.88 | 22.08 |
| Zm00001d026425_P003 | Maize | cytosol | 16.25 | 21.31 |
| CDY38083 | Canola | nucleus | 27.81 | 21.24 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 15.0 | 19.28 |
| Zm00001d033453_P001 | Maize | cytosol | 19.69 | 18.75 |
Protein Annotations
| EnsemblPlants:Zm00001d046215_P001 | EnsemblPlants:Zm00001d046215_T001 | EnsemblPlantsGene:Zm00001d046215 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF4 | ProteinID:AQL03866.1 |
| UniParc:UPI000844EC20 | UniProt:A0A1D6P1C4 | MapMan:35.1 | : | : | : |
Description
Putative RNA recognition motif containing family protein
Coordinates
chr9:-:72458802..72459910
Molecular Weight (calculated)
34688.4 Da
IEP (calculated)
4.526
GRAVY (calculated)
-0.567
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVIITPATD YKLPAFVLAD LESKNTGGME SALQKAEDIA VSMLAKGFVL GMDAVEKAKA FDEKHQLTST ATAKVASLDR TMGLSQKFST GTLVVNEKMK
101: EMDEKYQVAE KTKSALGAAK QTVSTASSFI MSNRYILTGA AWVTDAYNKV ATTTTDASKS IKERMMAEQE GANQSGETAK VDLLEISEAD EQEWKRHEDD
201: STKNVVQESP EMTCQESNSK TGIEEQKNHE GEIAVVSHMQ ENIDTAEKDP SCHESEVSKA NVHDSVLMTE QSEREHNQPE GEFANTHVPG SPVTILVTVS
301: TIDGNSSNGP KKPDSAEGFL
101: EMDEKYQVAE KTKSALGAAK QTVSTASSFI MSNRYILTGA AWVTDAYNKV ATTTTDASKS IKERMMAEQE GANQSGETAK VDLLEISEAD EQEWKRHEDD
201: STKNVVQESP EMTCQESNSK TGIEEQKNHE GEIAVVSHMQ ENIDTAEKDP SCHESEVSKA NVHDSVLMTE QSEREHNQPE GEFANTHVPG SPVTILVTVS
301: TIDGNSSNGP KKPDSAEGFL
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.