Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19950 | Sorghum | cytosol | 96.76 | 96.76 |
| Zm00001d009572_P001 | Maize | cytosol, mitochondrion, plasma membrane | 96.3 | 96.3 |
| Os05t0564400-02 | Rice | plasma membrane | 93.98 | 93.55 |
| TraesCS1A01G398400.1 | Wheat | cytosol | 93.52 | 93.52 |
| TraesCS1D01G405900.1 | Wheat | cytosol | 93.06 | 93.06 |
| TraesCS1B01G426300.1 | Wheat | cytosol | 93.06 | 93.06 |
| AT5G60860.1 | Thale cress | cytosol | 89.35 | 88.94 |
| Solyc07g053480.2.1 | Tomato | cytosol, plastid | 89.35 | 88.94 |
| VIT_10s0003g00550.t01 | Wine grape | cytosol | 89.35 | 88.94 |
| PGSC0003DMT400024319 | Potato | cytosol | 89.35 | 88.94 |
| KRH20359 | Soybean | cytosol, endoplasmic reticulum | 88.43 | 88.02 |
| KRH55839 | Soybean | endoplasmic reticulum | 87.5 | 87.1 |
| VIT_19s0014g01820.t01 | Wine grape | cytosol | 87.5 | 87.1 |
| KRH25681 | Soybean | cytosol | 87.5 | 87.1 |
| KRH50137 | Soybean | cytosol, mitochondrion | 87.04 | 86.64 |
| AT3G15060.1 | Thale cress | cytosol | 86.57 | 86.18 |
| Bra001581.1-P | Field mustard | cytosol | 86.57 | 85.78 |
| PGSC0003DMT400020208 | Potato | cytosol | 86.11 | 85.71 |
| CDX82451 | Canola | cytosol | 86.11 | 85.32 |
| KRH30863 | Soybean | cytosol | 85.65 | 85.25 |
| Solyc12g010790.1.1 | Tomato | cytosol, nucleus, unclear | 85.65 | 85.25 |
| CDX75804 | Canola | cytosol | 85.19 | 84.4 |
| KRH32712 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 84.72 | 84.33 |
| Bra032914.1-P | Field mustard | cytosol | 84.26 | 83.49 |
| CDY30818 | Canola | cytosol | 84.26 | 83.49 |
| CDY34094 | Canola | cytosol | 84.26 | 83.49 |
| PGSC0003DMT400033395 | Potato | cytosol | 83.33 | 83.33 |
| Solyc12g014080.1.1 | Tomato | cytosol | 83.33 | 82.95 |
| Solyc03g006270.2.1 | Tomato | cytosol | 82.87 | 82.87 |
| CDX90160 | Canola | cytosol | 82.41 | 82.79 |
| Bra010860.1-P | Field mustard | cytosol | 82.41 | 82.79 |
| CDY35757 | Canola | cytosol | 83.33 | 82.57 |
| CDX94631 | Canola | cytosol | 83.33 | 82.57 |
| Bra030105.1-P | Field mustard | cytosol | 83.33 | 82.57 |
| PGSC0003DMT400039780 | Potato | cytosol, mitochondrion | 82.87 | 82.49 |
| PGSC0003DMT400058784 | Potato | cytosol | 81.94 | 82.33 |
| CDY20100 | Canola | cytosol | 82.87 | 82.11 |
| CDY15659 | Canola | cytosol | 82.87 | 82.11 |
| Bra021589.1-P | Field mustard | cytosol | 82.87 | 82.11 |
| AT1G28550.1 | Thale cress | cytosol | 82.87 | 82.11 |
| Solyc10g008840.2.1 | Tomato | cytosol | 81.48 | 81.86 |
| AT2G33870.1 | Thale cress | cytosol | 81.94 | 81.19 |
| VIT_12s0028g02650.t01 | Wine grape | cytosol | 81.02 | 81.02 |
| Bra022959.1-P | Field mustard | cytosol | 81.02 | 80.28 |
| CDX79548 | Canola | cytosol | 73.15 | 80.2 |
| AT4G18430.1 | Thale cress | cytosol | 79.63 | 79.26 |
| CDY55638 | Canola | cytosol | 79.17 | 78.8 |
| CDY01540 | Canola | cytosol | 79.17 | 78.8 |
| Zm00001d046313_P001 | Maize | plastid | 78.7 | 78.34 |
| Bra012597.1-P | Field mustard | cytosol | 78.7 | 78.34 |
| CDX76522 | Canola | cytosol | 78.24 | 77.88 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 68.98 | 77.6 |
| Bra021009.1-P | Field mustard | cytosol | 77.78 | 77.42 |
| KRH27001 | Soybean | cytosol, endoplasmic reticulum | 77.31 | 76.61 |
| KRH22324 | Soybean | cytosol, endoplasmic reticulum | 76.85 | 76.15 |
| Zm00001d043935_P001 | Maize | cytosol | 77.31 | 75.91 |
| CDY60884 | Canola | cytosol | 72.22 | 69.96 |
| Zm00001d034675_P002 | Maize | cytosol | 67.13 | 67.44 |
| Zm00001d005495_P001 | Maize | extracellular, mitochondrion, plasma membrane | 66.2 | 64.13 |
| Zm00001d034802_P001 | Maize | cytosol | 65.28 | 60.26 |
| Zm00001d034803_P001 | Maize | cytosol | 64.81 | 59.83 |
| Zm00001d037004_P002 | Maize | cytosol | 78.24 | 58.88 |
| Zm00001d014278_P001 | Maize | extracellular, plasma membrane | 58.8 | 58.53 |
| Zm00001d048222_P001 | Maize | extracellular, plasma membrane | 58.33 | 58.06 |
| Zm00001d005504_P001 | Maize | cytosol, extracellular | 60.65 | 57.96 |
| Zm00001d028002_P001 | Maize | mitochondrion | 57.87 | 57.6 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 65.74 | 56.13 |
| Zm00001d021246_P002 | Maize | cytosol | 51.85 | 45.16 |
Protein Annotations
| EntrezGene:100284756 | MapMan:22.8.1.1 | Gene3D:3.40.50.300 | ProteinID:AQK88528.1 | UniProt:B6TX62 | EMBL:BT064711 |
| EMBL:EU969577 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF346 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000182D599 | EnsemblPlantsGene:Zm00001d039016 |
| EnsemblPlants:Zm00001d039016_P001 | EnsemblPlants:Zm00001d039016_T001 | : | : | : | : |
Description
Ras-related protein RABA1f
Coordinates
chr6:-:168723799..168725535
Molecular Weight (calculated)
24094.5 Da
IEP (calculated)
6.038
GRAVY (calculated)
-0.272
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRADDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIHVEDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWMREL RDHTDANIVM MLVGNKADLR HLRAVPTEDA KAFAERQNAF FMETSALEAM NVEDAFTEVL AQIYRVVSKK ALDIGDDPAA PPRGHTINVG
201: GKDDVSAVKK SACCSS
101: ENVERWMREL RDHTDANIVM MLVGNKADLR HLRAVPTEDA KAFAERQNAF FMETSALEAM NVEDAFTEVL AQIYRVVSKK ALDIGDDPAA PPRGHTINVG
201: GKDDVSAVKK SACCSS
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
Arabidopsis Description
RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.