Factsheet for Zm00001d046313_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89913	Sorghum	cytosol	98.62	98.62
Os06t0551400-01	Rice	cytosol, golgi, plasma membrane, plastid	96.77	96.77
TraesCS7A01G354400.1	Wheat	golgi	95.39	95.39
TraesCS7D01G368300.1	Wheat	cytosol	95.39	95.39
TraesCS7B01G273300.1	Wheat	plastid	94.47	94.47
HORVU7Hr1G089120.1	Barley	cytosol	95.39	83.81
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	78.34	78.7
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	77.88	78.24
Zm00001d037004_P002	Maize	cytosol	98.62	74.56
Zm00001d043935_P001	Maize	cytosol	72.35	71.36
Zm00001d034675_P002	Maize	cytosol	69.12	69.77
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	66.36	64.57
Zm00001d014278_P001	Maize	extracellular, plasma membrane	59.45	59.45
Zm00001d034802_P001	Maize	cytosol	64.06	59.4
Zm00001d034803_P001	Maize	cytosol	64.06	59.4
Zm00001d048222_P001	Maize	extracellular, plasma membrane	58.06	58.06
Zm00001d028002_P001	Maize	mitochondrion	57.6	57.6
Zm00001d005504_P001	Maize	cytosol, extracellular	59.91	57.52
Zm00001d021246_P002	Maize	cytosol	50.69	44.35

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	ProteinID:AQL04062.1	EMBL:BT069763	UniProt:C0PN94	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000195D231	EnsemblPlantsGene:Zm00001d046313	EnsemblPlants:Zm00001d046313_P001	EnsemblPlants:Zm00001d046313_T001

Description

Ras-related protein RABA1d

Coordinates

chr9:+:79854295..79858733

Molecular Weight (calculated)

23992.2 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.310

Length

217 amino acids

Sequence
(BLAST)

001: MAAGYRAEDD YDYLFKVVLI GDSGVGKSNL LSRFTRNEFS LESKSTIGVE FATRSLQVDG KVVKAQIWDT AGQERYRAIT SAYYRGAVGA LLVYDVTRHS
101: TFENVERWLK ELRDHTDPNI VVMLVGNKSD LRHLVAVQTD EGKAFAERES LYFMETSALE STNVENAFAE VLAQIYRIVD KRAVEAGEDA ASGPGRGEKI
201: NIKDDVSAVK KGGCCSS

Best Arabidopsis Sequence Match ( AT4G18800.1 )
(BLAST)

001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSLNVNEK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
201: VDVSAVKKTG CCSN

Arabidopsis Description

RABA1DRABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.