Factsheet for Zm00001d034803_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002475_P001
Zm00001d003674_P001
Zm00001d003675_P001
Zm00001d014267_P001
Zm00001d025412_P001
Zm00001d026150_P001
Zm00001d026206_P001
Zm00001d031493_P001
Zm00001d031612_P001
Zm00001d034777_P005
Zm00001d035920_P002
Zm00001d045559_P002
Zm00001d046215_P001
Zm00001d046992_P001
Zm00001d051524_P002
Zm00001d054082_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	Zm00001d003674_P001	AT2G23420.1	21798944
AT1G09630.1	Zm00001d003675_P001	AT2G23420.1	21798944
AT1G09630.1	Zm00001d025412_P001	AT2G23420.1	21798944
AT1G09630.1	Zm00001d034777_P005	AT2G23420.1	21798944
AT1G09630.1	Zm00001d002475_P001	AT4G17720.1	21798944
AT1G09630.1	Zm00001d014267_P001	AT4G17720.1	21798944
AT1G09630.1	Zm00001d026150_P001	AT4G17720.1	21798944
AT1G09630.1	Zm00001d026206_P001	AT4G17720.1	21798944
AT1G09630.1	Zm00001d031493_P001	AT4G17720.1	21798944
AT1G09630.1	Zm00001d031612_P001	AT4G17720.1	21798944
AT1G09630.1	Zm00001d035920_P002	AT4G17720.1	21798944
AT1G09630.1	Zm00001d045559_P002	AT4G17720.1	21798944
AT1G09630.1	Zm00001d046215_P001	AT4G17720.1	21798944
AT1G09630.1	Zm00001d046992_P001	AT4G17720.1	21798944
AT1G09630.1	Zm00001d051524_P002	AT4G17720.1	21798944
AT1G09630.1	Zm00001d054082_P001	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034802_P001	Maize	cytosol	99.15	99.15
EER90540	Sorghum	cytosol	87.18	86.44
Os03t0843100-01	Rice	cytosol	72.22	75.78
TraesCS5D01G529500.1	Wheat	cytosol	70.09	72.89
TraesCS5B01G530800.1	Wheat	cytosol	68.8	72.2
TraesCS4A01G343500.1	Wheat	cytosol	69.23	72.0
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	67.09	70.4
VIT_12s0035g01140.t01	Wine grape	extracellular	61.97	67.44
KRH26288	Soybean	endoplasmic reticulum	62.39	67.28
GSMUA_Achr2P05630_001	Banana	cytosol	61.54	66.98
CDY50888	Canola	cytosol	61.97	66.82
Bra020006.1-P	Field mustard	cytosol	61.54	66.36
CDX93495	Canola	cytosol	61.54	66.36
GSMUA_Achr6P28910_001	Banana	cytosol	61.54	66.36
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	61.11	66.2
PGSC0003DMT400064102	Potato	cytosol	60.26	65.89
Solyc01g103380.2.1	Tomato	nucleus	60.26	65.89
GSMUA_Achr6P18430_001	Banana	cytosol	63.25	65.78
KRH06049	Soybean	endoplasmic reticulum	60.68	65.74
AT1G09630.1	Thale cress	cytosol	60.68	65.44
Solyc10g045550.1.1	Tomato	nucleus	59.83	65.12
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	59.83	64.81
Zm00001d034675_P002	Maize	cytosol	59.4	64.65
Zm00001d046313_P001	Maize	plastid	59.4	64.06
Zm00001d043935_P001	Maize	cytosol	59.83	63.64
Zm00001d014278_P001	Maize	extracellular, plasma membrane	51.28	55.3
Zm00001d005504_P001	Maize	cytosol, extracellular	52.99	54.87
Zm00001d048222_P001	Maize	extracellular, plasma membrane	50.85	54.84
PGSC0003DMT400045950	Potato	cytosol	59.4	54.51
Zm00001d028002_P001	Maize	mitochondrion	50.43	54.38
HORVU5Hr1G120210.4	Barley	plastid	67.95	50.32
Zm00001d037004_P002	Maize	cytosol	60.26	49.13
Zm00001d021246_P002	Maize	cytosol	50.43	47.58

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:A0A1D6LBG1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	ProteinID:ONM11437.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF564	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000220CBBB	EnsemblPlantsGene:Zm00001d034803	EnsemblPlants:Zm00001d034803_P001	EnsemblPlants:Zm00001d034803_T001
SEG:seg	:	:	:	:	:

Description

Ras-related protein RABA2a

Coordinates

chr1:-:302454681..302456022

Molecular Weight (calculated)

25031.1 Da

IEP (calculated)

7.571

GRAVY (calculated)

-0.255

Length

234 amino acids

Sequence
(BLAST)

001: MSGRRPATWD QAADDYDYLF KVVLVGDSGV GKSNLLSRFT RNAFSLDSKS TIGVEFATRT IQVDGKTIKA QIWDTAGQER YRAITSAYYR GAAGALLVYD
101: VTRADTFESA ARWLRELRDH ADGRGAAVML VGNKTDLARS GSRSRHHHPR AVPRGDAAAL AEREGLSFVE TSALDATNVD AAFETLLTEI YRAVSRKALA
201: ASSAGDDAGA VGEGQAIQVS ASDSAGLTTR CCAF

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.