Factsheet for TraesCS5D01G529500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2A01G445100.1
TraesCS2B01G318300.2
TraesCS2B01G466100.1
TraesCS2D01G301100.1
TraesCS2D01G444000.1
TraesCS4A01G354500.1
TraesCS4A01G458600.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1
TraesCS6A01G265600.1
TraesCS6B01G292900.1
TraesCS6D01G249000.1
TraesCS7A01G030900.2
TraesCS7D01G027100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT1G09630.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT1G09630.1	TraesCS5D01G517600.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS2A01G445100.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS2B01G466100.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS2D01G444000.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS4A01G458600.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6A01G265600.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6B01G292900.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6D01G249000.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS7A01G030900.2	AT4G17720.1	21798944
AT1G09630.1	TraesCS7D01G027100.1	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G343500.1	Wheat	cytosol	98.67	98.67
TraesCS5B01G530800.1	Wheat	cytosol	97.33	98.21
Os03t0843100-01	Rice	cytosol	81.78	82.51
VIT_12s0035g01140.t01	Wine grape	extracellular	71.56	74.88
KRH26288	Soybean	endoplasmic reticulum	72.0	74.65
KRH06049	Soybean	endoplasmic reticulum	71.56	74.54
PGSC0003DMT400064102	Potato	cytosol	70.22	73.83
Solyc01g103380.2.1	Tomato	nucleus	70.22	73.83
CDY50888	Canola	cytosol	71.11	73.73
CDX93495	Canola	cytosol	70.67	73.27
Bra020006.1-P	Field mustard	cytosol	70.67	73.27
GSMUA_Achr6P28910_001	Banana	cytosol	70.22	72.81
AT1G09630.1	Thale cress	cytosol	70.22	72.81
GSMUA_Achr2P05630_001	Banana	cytosol	69.33	72.56
GSMUA_Achr6P18430_001	Banana	cytosol	72.0	72.0
Solyc10g045550.1.1	Tomato	nucleus	68.44	71.63
Zm00001d034802_P001	Maize	cytosol	72.89	70.09
Zm00001d034803_P001	Maize	cytosol	72.89	70.09
EER90540	Sorghum	cytosol	73.33	69.92
TraesCS5D01G188900.1	Wheat	cytosol	65.78	68.52
TraesCS3D01G357500.1	Wheat	cytosol	65.78	68.2
HORVU5Hr1G120210.4	Barley	plastid	94.67	67.41
TraesCS1D01G013300.1	Wheat	cytosol	66.67	67.26
TraesCS7D01G368300.1	Wheat	cytosol	64.44	66.82
TraesCS5D01G498600.1	Wheat	cytosol	63.56	66.51
TraesCS7D01G289000.1	Wheat	cytosol	63.56	66.2
TraesCS3D01G289400.1	Wheat	cytosol	64.89	66.06
TraesCS1D01G405900.1	Wheat	cytosol	63.11	65.74
TraesCS3D01G244500.1	Wheat	cytosol	63.56	65.6
TraesCS1D01G133200.1	Wheat	cytosol, plastid	62.22	64.52
TraesCS1D01G136900.1	Wheat	cytosol	57.78	60.19
PGSC0003DMT400045950	Potato	cytosol	68.0	60.0
TraesCS5D01G179100.1	Wheat	cytosol	58.22	57.96
TraesCS7D01G381500.1	Wheat	cytosol	50.67	50.89
TraesCS5D01G321800.1	Wheat	cytosol	52.44	48.16

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF564	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS5D01G529500
EnsemblPlants:TraesCS5D01G529500.1	TIGR:cd01868	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:-:546075294..546077013

Molecular Weight (calculated)

24369.7 Da

IEP (calculated)

8.183

GRAVY (calculated)

-0.168

Length

225 amino acids

Sequence
(BLAST)

001: MAARARRAAA WEQGGDEYDY LFKVVLIGDS GVGKSNLLSR FTKNTFSLDS KSTIGVEFAT RTTQVEGKTI KAQIWDTAGQ ERYRAITSAY YRGAVGALLV
101: YDVTKAATFD NVKRWLKELR DHADSNIVIM LIGNKTDLRH LRSVATDKAA GFAEWEGLSF VETSALDATN VDRAFQTVLA EIYRVVSKKA LSSTDDSGAG
201: AVGEGQSILV SGGEPASVSS RCCSF

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.