Factsheet for Bra020006.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012646.1-P
Bra012647.1-P
Bra039198.1-P
Bra040177.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	Bra039198.1-P	AT2G23420.1	21798944
AT1G09630.1	Bra012646.1-P	AT4G17720.1	21798944
AT1G09630.1	Bra012647.1-P	AT4G17720.1	21798944
AT1G09630.1	Bra040177.1-P	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50888	Canola	cytosol	99.54	99.54
CDX93495	Canola	cytosol	98.62	98.62
AT1G09630.1	Thale cress	cytosol	96.31	96.31
VIT_12s0035g01140.t01	Wine grape	extracellular	89.4	90.23
KRH06049	Soybean	endoplasmic reticulum	88.94	89.35
KRH26288	Soybean	endoplasmic reticulum	88.48	88.48
Solyc10g045550.1.1	Tomato	nucleus	86.64	87.44
GSMUA_Achr2P05630_001	Banana	cytosol	85.25	86.05
GSMUA_Achr6P28910_001	Banana	cytosol	85.71	85.71
OQU77196	Sorghum	cytosol	80.18	79.09
Os05t0105100-01	Rice	golgi, plasma membrane	79.72	78.64
HORVU1Hr1G001920.2	Barley	cytosol	80.65	77.78
GSMUA_Achr6P18430_001	Banana	cytosol	80.65	77.78
TraesCS1B01G018900.1	Wheat	cytosol	77.88	75.78
TraesCS1D01G013300.1	Wheat	cytosol	77.88	75.78
Bra015578.1-P	Field mustard	cytosol	74.65	75.0
TraesCS1A01G015400.1	Wheat	cytosol	76.96	74.89
Os03t0843100-01	Rice	cytosol	76.96	74.89
Bra018190.1-P	Field mustard	cytosol	73.73	73.73
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	75.58	73.54
PGSC0003DMT400045950	Potato	cytosol	86.18	73.33
Bra002589.1-P	Field mustard	cytosol	73.27	73.27
EER98344	Sorghum	cytosol	75.12	73.09
Bra020334.1-P	Field mustard	cytosol	72.35	72.35
TraesCS5B01G530800.1	Wheat	cytosol	73.73	71.75
TraesCS4A01G343500.1	Wheat	cytosol	73.73	71.11
TraesCS5D01G529500.1	Wheat	cytosol	73.27	70.67
Bra026016.1-P	Field mustard	cytosol	68.2	68.52
Bra001581.1-P	Field mustard	cytosol	68.66	68.35
Bra021589.1-P	Field mustard	cytosol	68.2	67.89
Bra010860.1-P	Field mustard	cytosol	66.82	67.44
Bra030105.1-P	Field mustard	cytosol	66.36	66.06
Bra032914.1-P	Field mustard	cytosol	65.9	65.6
Bra022959.1-P	Field mustard	cytosol	63.59	63.3
Bra032424.1-P	Field mustard	cytosol	64.98	63.23
Bra031573.1-P	Field mustard	cytosol	74.19	62.89
Bra012597.1-P	Field mustard	cytosol	62.67	62.67
Zm00001d034802_P001	Maize	cytosol	66.82	61.97
Bra021009.1-P	Field mustard	cytosol	61.75	61.75
Zm00001d034803_P001	Maize	cytosol	66.36	61.54
Bra001439.1-P	Field mustard	cytosol	61.29	60.18
EER90540	Sorghum	cytosol	65.44	60.17
Bra038701.1-P	Field mustard	cytosol	60.37	59.01
Bra011818.1-P	Field mustard	cytosol	60.37	58.74
Bra037516.1-P	Field mustard	cytosol	59.91	58.3
Bra009040.1-P	Field mustard	cytosol	57.6	56.05
Bra037810.1-P	Field mustard	cytosol	57.6	55.56
HORVU5Hr1G120210.4	Barley	plastid	73.73	50.63
Bra033277.1-P	Field mustard	cytosol	54.84	50.21
Bra034771.1-P	Field mustard	cytosol	60.37	49.81

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra020006	EnsemblPlants:Bra020006.1	EnsemblPlants:Bra020006.1-P	GO:GO:0000166
GO:GO:0000911	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829
GO:GO:0005886	GO:GO:0007049	GO:GO:0008150	GO:GO:0009504	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	UniProt:M4DU13	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF613	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253E8C1	SEG:seg

Description

AT1G09630 (E=1e-110) ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A | ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding

Coordinates

chrA06:-:3307099..3308370

Molecular Weight (calculated)

24131.5 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.347

Length

217 amino acids

Sequence
(BLAST)

001: MARRPEEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEIYRIISKK SISSDQANAN ANVKEGHTID
201: VAASSESNTK KPCCSSS

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.