CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89059
EES12769
KXG26318
OQU85574
OQU90665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	KXG26318	AT2G23420.1	21798944
AT1G09630.1	OQU90665	AT2G23420.1	21798944
AT1G09630.1	EER89059	AT4G17720.1	21798944
AT1G09630.1	EES12769	AT4G17720.1	21798944
AT1G09630.1	OQU85574	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	96.41	96.41
Solyc01g103380.2.1	Tomato	nucleus	73.54	76.64
PGSC0003DMT400064102	Potato	cytosol	73.54	76.64
VIT_12s0035g01140.t01	Wine grape	extracellular	73.09	75.81
CDY50888	Canola	cytosol	73.54	75.58
KRH06049	Soybean	endoplasmic reticulum	73.09	75.46
Bra020006.1-P	Field mustard	cytosol	73.09	75.12
CDX93495	Canola	cytosol	73.09	75.12
AT1G09630.1	Thale cress	cytosol	72.65	74.65
KRH26288	Soybean	endoplasmic reticulum	71.75	73.73
Solyc10g045550.1.1	Tomato	nucleus	70.85	73.49
GSMUA_Achr6P18430_001	Banana	cytosol	73.99	73.33
GSMUA_Achr6P28910_001	Banana	cytosol	71.3	73.27
GSMUA_Achr2P05630_001	Banana	cytosol	70.4	73.02
KXG37238	Sorghum	cytosol	69.06	71.63
OQU77196	Sorghum	cytosol	70.4	71.36
OQU89311	Sorghum	cytosol	66.37	68.52
EES19812	Sorghum	cytosol	66.82	67.73
EER89913	Sorghum	cytosol	65.47	67.28
EES19950	Sorghum	cytosol	65.02	67.13
EER90540	Sorghum	cytosol	70.4	66.53
OQU87300	Sorghum	cytosol	63.23	64.38
EES17935	Sorghum	cytosol	61.44	63.13
PGSC0003DMT400045950	Potato	cytosol	70.85	61.96
EER96479	Sorghum	cytosol	61.88	61.06
EER92725	Sorghum	cytosol	58.3	59.91
OQU91938	Sorghum	cytosol	57.4	58.99
EER90389	Sorghum	cytosol	45.29	48.33
EER97073	Sorghum	cytosol	53.81	46.88

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8084597	UniProt:C5X3H5	EnsemblPlants:EER98344	ProteinID:EER98344
ProteinID:EER98344.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF564	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3002G103500
SUPFAM:SSF52540	unigene:Sbi.20880	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A83F3F
RefSeq:XP_002461823.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:12157805..12161837

Molecular Weight (calculated)

24543.0 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.192

Length

223 amino acids

Sequence
(BLAST)

001: MARRPASWEQ GGDEYDYLFK VVLIGDSGVG KSNLLSRFTK NTFALDSKST IGVEFATRTI QVDTKTIKAQ IWDTAGQERY RAITSAYYRG AVGALLVYDV
101: TKVMTFENVK RWLKELRDHA DSNIVVMLIG NKIDLRHLRS VAVEDAASFA ESEGLFFIET SALDATNVEK AFQTVLAEIY RIISKKPLSS EESGSGSGNL
201: REGQSIQVSA TNSSALTSRC CSS

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.