CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005504_P001	Maize	cytosol, extracellular	95.13	95.13
TraesCS5D01G179100.1	Wheat	cytosol	86.73	86.73
TraesCS5A01G176000.1	Wheat	cytosol	86.73	86.73
TraesCS5B01G171900.1	Wheat	cytosol	86.28	86.28
GSMUA_Achr3P11810_001	Banana	cytosol	84.07	84.44
VIT_13s0064g01300.t01	Wine grape	cytosol	84.07	84.07
Bra037516.1-P	Field mustard	cytosol	80.53	81.61
CDX86332	Canola	cytosol	80.53	81.61
CDY54519	Canola	cytosol	80.09	81.17
AT5G47960.1	Thale cress	cytosol	79.65	80.72
GSMUA_Achr1P19620_001	Banana	cytosol	81.42	79.65
EER92725	Sorghum	cytosol	72.12	75.12
OQU91938	Sorghum	cytosol	72.12	75.12
EES19950	Sorghum	cytosol	59.73	62.5
EER98344	Sorghum	cytosol	61.06	61.88
OQU89311	Sorghum	cytosol	58.85	61.57
KXG37238	Sorghum	cytosol	58.41	61.4
EER89913	Sorghum	cytosol	58.85	61.29
EES19812	Sorghum	cytosol	58.41	60.0
OQU77196	Sorghum	cytosol	55.75	57.27
EES17935	Sorghum	cytosol	54.87	57.14
OQU87300	Sorghum	cytosol	55.31	57.08
EER90540	Sorghum	cytosol	56.64	54.24
EER90389	Sorghum	cytosol	50.0	54.07
EER97073	Sorghum	cytosol	57.96	51.17

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8063474	UniProt:C5X867	EnsemblPlants:EER96479	ProteinID:EER96479
ProteinID:EER96479.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
EnsemblPlantsGene:SORBI_3002G153500	SUPFAM:SSF52540	unigene:Sbi.1619	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001A8378F	RefSeq:XP_002459958.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:45938365..45942714

Molecular Weight (calculated)

24951.7 Da

IEP (calculated)

7.504

GRAVY (calculated)

-0.246

Length

226 amino acids

Sequence
(BLAST)

001: MSRGGSHGEL GQRIDYVFKV VLIGDSAVGK SQLLARFARN EFNLDSKATI GVEFQTRTLN IDARTVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: KRQSFDHVAR WLEELRGHAD KNIVIMLIGN KSDLGTLRSV ATEDAKEFAE RENLFFMETS ALEAVNVENA FMTVLTEIYR VVSKKNLVAN EESDSSGNSS
201: LLKGTKIVVP GQEPPPTSKA TCCMSS

Best Arabidopsis Sequence Match ( AT5G47960.1 )
(BLAST)

001: MSKFQSNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLEID RKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS

Arabidopsis Description

RABA4CSMG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.