Factsheet for PGSC0003DMT400064102

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103380.2.1	Tomato	nucleus	99.53	99.53
VIT_12s0035g01140.t01	Wine grape	extracellular	90.65	90.23
GSMUA_Achr2P05630_001	Banana	cytosol	84.58	84.19
GSMUA_Achr6P28910_001	Banana	cytosol	85.05	83.87
OQU77196	Sorghum	cytosol	82.71	80.45
GSMUA_Achr6P18430_001	Banana	cytosol	82.24	78.22
Os05t0105100-01	Rice	golgi, plasma membrane	80.37	78.18
HORVU1Hr1G001920.2	Barley	cytosol	80.84	76.89
PGSC0003DMT400045950	Potato	cytosol	90.65	76.08
TraesCS1B01G018900.1	Wheat	cytosol	78.5	75.34
TraesCS1D01G013300.1	Wheat	cytosol	78.04	74.89
TraesCS1A01G015400.1	Wheat	cytosol	77.57	74.44
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	77.1	73.99
EER98344	Sorghum	cytosol	76.64	73.54
PGSC0003DMT400078200	Potato	cytosol	73.83	73.49
PGSC0003DMT400053686	Potato	cytosol	73.83	73.15
Os03t0843100-01	Rice	cytosol	76.17	73.09
PGSC0003DMT400069776	Potato	cytosol	73.36	73.02
PGSC0003DMT400055848	Potato	cytosol	71.96	71.96
TraesCS5B01G530800.1	Wheat	cytosol	74.3	71.3
TraesCS4A01G343500.1	Wheat	cytosol	74.3	70.67
TraesCS5D01G529500.1	Wheat	cytosol	73.83	70.22
PGSC0003DMT400024319	Potato	cytosol	71.03	70.05
PGSC0003DMT400020208	Potato	cytosol	70.09	69.12
PGSC0003DMT400058784	Potato	cytosol	67.29	66.98
PGSC0003DMT400073077	Potato	cytosol	67.29	66.36
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	66.82	65.9
PGSC0003DMT400033395	Potato	cytosol	65.89	65.28
Zm00001d034802_P001	Maize	cytosol	66.82	61.11
PGSC0003DMT400041813	Potato	cytosol	63.08	60.27
Zm00001d034803_P001	Maize	cytosol	65.89	60.26
PGSC0003DMT400060649	Potato	cytosol	62.15	59.91
EER90540	Sorghum	cytosol	65.42	59.32
PGSC0003DMT400065028	Potato	cytosol	62.15	58.85
PGSC0003DMT400033664	Potato	cytosol	61.22	58.48
PGSC0003DMT400021064	Potato	cytosol	59.81	56.64
HORVU5Hr1G120210.4	Barley	plastid	75.23	50.95
PGSC0003DMT400000356	Potato	cytosol	56.54	50.21

Protein Annotations

EntrezGene:102585266	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0000911	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0005886	GO:GO:0007049
GO:GO:0008150	GO:GO:0009504	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	UniProt:M1CBR3
InterPro:P-loop_NTPase	PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400024909	PGSC:PGSC0003DMG400024909	EnsemblPlants:PGSC0003DMT400064102	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF613	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000294B0BC
RefSeq:XP_006349310.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024909]

Coordinates

chr1:-:80087854..80091136

Molecular Weight (calculated)

23791.3 Da

IEP (calculated)

6.554

GRAVY (calculated)

-0.278

Length

214 amino acids

Sequence
(BLAST)

001: MARRAEEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFLLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSFAEKEGLS FIETSALEAT NVEKSFQTIL SEIYRIISKK PLSSEEPATA NIKEGKTLVV
201: GAEEPAPKKA CCSA

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.