Factsheet for PGSC0003DMT400060649

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g012180.2.1	Tomato	cytosol, unclear	98.65	98.65
PGSC0003DMT400041813	Potato	cytosol	93.69	92.86
KRH31313	Soybean	endoplasmic reticulum	88.29	87.89
VIT_07s0191g00030.t01	Wine grape	cytosol	89.19	87.61
KRG97554	Soybean	cytosol, endoplasmic reticulum	87.39	87.0
GSMUA_Achr3P01690_001	Banana	cytosol	81.08	82.19
GSMUA_Achr8P18090_001	Banana	cytosol	79.73	81.19
Zm00001d014278_P001	Maize	extracellular, plasma membrane	78.83	80.65
GSMUA_Achr3P21290_001	Banana	cytosol	78.83	79.91
Os10t0377400-01	Rice	cytosol	77.48	79.63
TraesCS1D01G136900.1	Wheat	cytosol	77.48	79.63
TraesCS1B01G152100.1	Wheat	cytosol	77.48	79.63
TraesCS1A01G131500.2	Wheat	cytosol	77.48	79.63
OQU91938	Sorghum	cytosol	77.48	79.26
Zm00001d048222_P001	Maize	extracellular, plasma membrane	75.68	77.42
EER92725	Sorghum	cytosol	75.68	77.42
Zm00001d028002_P001	Maize	mitochondrion	75.23	76.96
PGSC0003DMT400065028	Potato	cytosol	75.23	73.89
PGSC0003DMT400033664	Potato	cytosol	69.82	69.2
PGSC0003DMT400021064	Potato	cytosol	69.37	68.14
CDX69367	Canola	cytosol	52.7	63.59
HORVU1Hr1G034400.4	Barley	plasma membrane	76.58	62.27
PGSC0003DMT400064102	Potato	cytosol	59.91	62.15
PGSC0003DMT400069776	Potato	cytosol	59.91	61.86
PGSC0003DMT400055848	Potato	cytosol	59.46	61.68
PGSC0003DMT400078200	Potato	cytosol	59.01	60.93
PGSC0003DMT400053686	Potato	cytosol	59.01	60.65
PGSC0003DMT400000356	Potato	cytosol	65.32	60.17
PGSC0003DMT400024319	Potato	cytosol	58.56	59.91
PGSC0003DMT400058784	Potato	cytosol	56.76	58.6
PGSC0003DMT400020208	Potato	cytosol	56.76	58.06
PGSC0003DMT400073077	Potato	cytosol	56.31	57.6
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	55.41	56.68
PGSC0003DMT400033395	Potato	cytosol	54.95	56.48
PGSC0003DMT400045950	Potato	cytosol	57.66	50.2

Protein Annotations

EntrezGene:102588781	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1C674	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400023588	PGSC:PGSC0003DMG400023588	EnsemblPlants:PGSC0003DMT400060649	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002964433
RefSeq:XP_006346741.1	:	:	:	:	:

Description

NtRab11D [Source:PGSC_GENE;Acc:PGSC0003DMG400023588]

Coordinates

chr4:-:8054636..8060725

Molecular Weight (calculated)

24598.3 Da

IEP (calculated)

8.651

GRAVY (calculated)

-0.273

Length

222 amino acids

Sequence
(BLAST)

001: MASGYGDSSQ KIDYVFKVVL IGDSAVGKSQ ILARFARNEF SLDSKATIGV EFQTRTLVIQ HKSVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QTFDHIPRWL EELRAHADRN IVIILIGNKT DLKDQRAVPT EDAKEFAQKE GLFFLETSAM EATNVEDAFS TVLTEIFNIV NKKNLAADDN PPNGNPASLS
201: GKKILVPGPA QVIPEKRACC RS

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.