Factsheet for PGSC0003DMT400021064

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079030.1.1	Tomato	plastid	98.67	98.67
PGSC0003DMT400033664	Potato	cytosol	84.96	85.71
Bra001439.1-P	Field mustard	cytosol	80.53	82.35
CDX73833	Canola	cytosol	80.53	82.35
CDY00758	Canola	cytosol	80.53	82.35
AT3G12160.1	Thale cress	cytosol	80.53	81.98
CDY08447	Canola	cytosol	80.53	81.98
CDY42133	Canola	cytosol	80.53	81.98
VIT_08s0007g07800.t01	Wine grape	cytosol	80.53	81.61
CDY52622	Canola	cytosol	80.09	81.53
Bra038701.1-P	Field mustard	cytosol	80.09	81.53
CDY50568	Canola	cytosol	80.09	81.53
KRH75359	Soybean	endoplasmic reticulum	78.76	79.82
KRH33003	Soybean	cytosol	78.76	79.11
KRG88929	Soybean	cytosol	77.88	78.92
KRH71891	Soybean	cytosol	76.11	77.13
PGSC0003DMT400065028	Potato	cytosol	75.66	75.66
PGSC0003DMT400060649	Potato	cytosol	68.14	69.37
Bra034771.1-P	Field mustard	cytosol	80.53	69.2
PGSC0003DMT400041813	Potato	cytosol	68.58	69.2
PGSC0003DMT400055848	Potato	cytosol	58.85	62.15
PGSC0003DMT400053686	Potato	cytosol	58.85	61.57
PGSC0003DMT400024319	Potato	cytosol	58.85	61.29
PGSC0003DMT400078200	Potato	cytosol	57.96	60.93
PGSC0003DMT400058784	Potato	cytosol	57.52	60.47
PGSC0003DMT400069776	Potato	cytosol	57.52	60.47
PGSC0003DMT400020208	Potato	cytosol	57.52	59.91
PGSC0003DMT400064102	Potato	cytosol	56.64	59.81
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	56.64	58.99
PGSC0003DMT400033395	Potato	cytosol	56.19	58.8
PGSC0003DMT400073077	Potato	cytosol	55.75	58.06
PGSC0003DMT400000356	Potato	cytosol	60.18	56.43
PGSC0003DMT400045950	Potato	cytosol	57.08	50.59

Protein Annotations

EntrezGene:102580519	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1AEJ6	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400008154	PGSC:PGSC0003DMG400008154	EnsemblPlants:PGSC0003DMT400021064	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002954D18
RefSeq:XP_006351381.1	SEG:seg	:	:	:	:

Description

GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008154]

Coordinates

chr10:+:58681541..58683362

Molecular Weight (calculated)

24920.7 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.180

Length

226 amino acids

Sequence
(BLAST)

001: MSSNLYADHY NQKIDYVFKI VLIGDSAVGK SQLLARFARN EFSLDSKATI GVEFQTKTLL VDNKTVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDLT
101: KRQSFDHMAR WLEELRGHAD KNIVIMLIAN KCDLGSLRAV PVEDAQEFAE RENLFFMETS ALQSTNVEGA FMTVLTEIYK IISKNTLIAA PGADYGKSQS
201: LKGTRIVVPG QDSDSGGNSG GCCMSS

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.