CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038701.1-P	Field mustard	cytosol	100.0	100.0
CDY52622	Canola	cytosol	100.0	100.0
AT3G12160.1	Thale cress	cytosol	99.1	99.1
CDY00758	Canola	cytosol	98.2	98.64
CDX73833	Canola	cytosol	97.75	98.19
CDY08447	Canola	cytosol	97.75	97.75
CDY42133	Canola	cytosol	97.75	97.75
KRH33003	Soybean	cytosol	88.74	87.56
VIT_08s0007g07800.t01	Wine grape	cytosol	86.04	85.65
KRH71891	Soybean	cytosol	84.68	84.3
Solyc10g079030.1.1	Tomato	plastid	82.88	81.42
PGSC0003DMT400033664	Potato	cytosol	81.98	81.25
Solyc03g064020.2.1	Tomato	cytosol	81.08	80.36
PGSC0003DMT400021064	Potato	cytosol	81.53	80.09
CDX86332	Canola	cytosol	79.28	78.92
CDY54519	Canola	cytosol	78.83	78.48
CDX69843	Canola	cytosol	68.02	67.71
CDX96994	Canola	cytosol	68.02	67.71
CDY18682	Canola	cytosol	68.47	67.56
CDX81274	Canola	cytosol	68.02	66.52
CDY69836	Canola	cytosol	66.67	66.07
CDX90160	Canola	cytosol	59.46	61.4
CDY06256	Canola	cytosol	59.01	61.22
CDY09919	Canola	cytosol	59.01	61.22
CDY35757	Canola	cytosol	59.46	60.55
CDY71720	Canola	cytosol	59.01	60.37
CDY50888	Canola	cytosol	59.01	60.37
CDY33014	Canola	cytosol	59.01	60.37
CDX96799	Canola	cytosol	58.56	60.19
CDY06703	Canola	cytosol	58.56	60.19
CDY34094	Canola	cytosol	59.01	60.09
CDY30818	Canola	cytosol	59.01	60.09
CDY15659	Canola	cytosol	59.01	60.09
CDX94631	Canola	cytosol	59.01	60.09
CDX76522	Canola	cytosol	58.56	59.91
CDY32661	Canola	cytosol	58.56	59.91
CDY02867	Canola	cytosol	58.56	59.91
CDX93495	Canola	cytosol	58.56	59.91
CDY35128	Canola	cytosol	58.11	59.72
CDX99430	Canola	cytosol	57.21	59.35
CDY20100	Canola	cytosol	58.11	59.17
CDX82451	Canola	cytosol	58.11	59.17
CDY62557	Canola	cytosol	57.21	59.07
CDY64916	Canola	cytosol	57.21	59.07
CDY01540	Canola	cytosol	57.66	58.99
CDY55638	Canola	cytosol	57.66	58.99
CDX75804	Canola	cytosol	57.21	58.26
CDY40023	Canola	cytosol	56.31	57.87
CDY06210	Canola	cytosol	57.21	56.95
CDY09976	Canola	cytosol	57.21	56.95
CDX79548	Canola	cytosol	50.45	56.85
CDX87774	Canola	cytosol	54.95	56.48
CDY60884	Canola	cytosol	55.41	55.16
CDX90017	Canola	cytosol	58.56	54.85
CDY15192	Canola	cytosol	58.56	54.85
CDX69367	Canola	cytosol	43.24	52.17
CDX86101	Canola	cytosol	58.56	50.78
CDX80299	Canola	cytosol	59.01	50.78
CDX81790	Canola	plastid	58.11	48.31
CDX99094	Canola	cytosol	58.56	45.3
CDX69369	Canola	cytosol	66.22	36.03

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078IRM3	UniProt:A0A078IRM3	EnsemblPlants:CDY50568	ProteinID:CDY50568
ProteinID:CDY50568.1	ProteinID:CDY52622.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00096999001	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0002545412	:	:	:	:

Description

BnaA01g30820DBnaA01g30820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRM3]

Coordinates

chrLK032922:+:83909..85230

Molecular Weight (calculated)

24736.5 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.274

Length

222 amino acids

Sequence
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEE ESGKRGGCCG KT

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.