Factsheet for PGSC0003DMT400020208

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	99.08	99.08
PGSC0003DMT400024319	Potato	cytosol	93.55	93.55
Os09t0327100-01	Rice	plasma membrane	90.78	91.2
OQU89311	Sorghum	cytosol	90.78	91.2
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	90.78	91.2
TraesCS5A01G184100.1	Wheat	golgi, plastid	90.78	91.2
KRH25681	Soybean	cytosol	90.78	90.78
TraesCS5D01G188900.1	Wheat	cytosol	90.32	90.74
KRH55839	Soybean	endoplasmic reticulum	90.32	90.32
TraesCS5B01G182200.1	Wheat	cytosol	89.86	90.28
TraesCS7D01G289000.1	Wheat	cytosol	89.86	90.28
TraesCS7A01G285200.1	Wheat	cytosol	89.86	90.28
TraesCS7B01G200600.1	Wheat	cytosol	89.4	89.81
VIT_12s0028g02650.t01	Wine grape	cytosol	89.4	89.81
Os05t0564400-02	Rice	plasma membrane	89.4	89.4
GSMUA_Achr3P15540_001	Banana	cytosol	88.48	88.89
EES19950	Sorghum	cytosol	88.02	88.43
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	88.02	88.02
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	87.1	87.5
GSMUA_Achr8P27180_001	Banana	cytosol	86.64	87.04
GSMUA_Achr1P11940_001	Banana	cytosol	86.64	87.04
TraesCS1A01G398400.1	Wheat	cytosol	86.18	86.57
GSMUA_Achr5P09130_001	Banana	cytosol	86.18	86.18
TraesCS1B01G426300.1	Wheat	cytosol	85.71	86.11
TraesCS1D01G405900.1	Wheat	cytosol	85.71	86.11
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	85.71	86.11
GSMUA_Achr4P02760_001	Banana	cytosol	73.27	83.68
PGSC0003DMT400033395	Potato	cytosol	82.95	83.33
PGSC0003DMT400058784	Potato	cytosol	82.49	83.26
GSMUA_Achr1P04780_001	Banana	cytosol	76.5	83.0
KRH27001	Soybean	cytosol, endoplasmic reticulum	81.11	80.73
KRH22324	Soybean	cytosol, endoplasmic reticulum	80.18	79.82
PGSC0003DMT400073077	Potato	cytosol	79.72	79.72
GSMUA_Achr7P14790_001	Banana	cytosol	68.66	77.6
TraesCS3D01G244500.1	Wheat	cytosol	77.88	77.52
TraesCS3A01G247000.1	Wheat	cytosol	77.88	77.52
OQU87300	Sorghum	cytosol	74.65	73.97
Zm00001d043935_P001	Maize	cytosol	74.65	73.64
PGSC0003DMT400064102	Potato	cytosol	69.12	70.09
PGSC0003DMT400053686	Potato	cytosol	69.59	69.91
PGSC0003DMT400078200	Potato	cytosol	68.2	68.84
PGSC0003DMT400069776	Potato	cytosol	66.82	67.44
PGSC0003DMT400055848	Potato	cytosol	64.98	65.89
GSMUA_Achr7P10970_001	Banana	cytosol	67.74	58.1
PGSC0003DMT400041813	Potato	cytosol	59.91	58.04
PGSC0003DMT400065028	Potato	cytosol	59.91	57.52
PGSC0003DMT400021064	Potato	cytosol	59.91	57.52
PGSC0003DMT400045950	Potato	cytosol	67.28	57.25
PGSC0003DMT400060649	Potato	cytosol	58.06	56.76
PGSC0003DMT400033664	Potato	cytosol	57.6	55.8
PGSC0003DMT400000356	Potato	cytosol	58.99	53.11
TraesCS3B01G272300.1	Wheat	cytosol	77.88	48.84

Protein Annotations

EntrezGene:102603516	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1AD38	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG402007810	PGSC:PGSC0003DMG402007810	EnsemblPlants:PGSC0003DMT400020208	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296531C	RefSeq:XP_006350040.1
RefSeq:XP_006350041.1	RefSeq:XP_006350042.1	:	:	:	:

Description

Guanine nucleotide regulatory protein [Source:PGSC_GENE;Acc:PGSC0003DMG402007810]

Coordinates

chr12:+:1570125..1573174

Molecular Weight (calculated)

24088.4 Da

IEP (calculated)

5.401

GRAVY (calculated)

-0.267

Length

217 amino acids

Sequence
(BLAST)

001: MGAYRSDDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIRVDDK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDSSIV IMLVGNKADL RHLRAVSTED AQAFAEKEST FFMETSALES MNVESAFTEV LTQIHRVVSR KALEVGDDPA ALPKGQTINV
201: GGKDDVSEVK KAGCCSA

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.