Factsheet for GSMUA_Achr7P10970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P03390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	GSMUA_Achr6P03390_001	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02540_001	Banana	cytosol	54.94	72.4
GSMUA_Achr4P02760_001	Banana	cytosol	53.36	71.05
GSMUA_Achr7P14790_001	Banana	cytosol	53.75	70.83
GSMUA_Achr1P04780_001	Banana	cytosol	55.34	70.0
GSMUA_Achr6P31790_001	Banana	cytosol	45.45	69.28
AT5G60860.1	Thale cress	cytosol	59.29	69.12
KRH50137	Soybean	cytosol, mitochondrion	59.29	69.12
KRH20359	Soybean	cytosol, endoplasmic reticulum	59.29	69.12
PGSC0003DMT400024319	Potato	cytosol	58.89	68.66
Solyc07g053480.2.1	Tomato	cytosol, plastid	58.89	68.66
OQU89311	Sorghum	cytosol	58.5	68.52
Os09t0327100-01	Rice	plasma membrane	58.5	68.52
VIT_10s0003g00550.t01	Wine grape	cytosol	58.5	68.2
TraesCS7D01G289000.1	Wheat	cytosol	58.1	68.06
TraesCS7A01G285200.1	Wheat	cytosol	58.1	68.06
TraesCS5A01G184100.1	Wheat	golgi, plastid	58.1	68.06
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	58.1	68.06
Solyc10g008840.2.1	Tomato	cytosol	57.71	67.91
PGSC0003DMT400058784	Potato	cytosol	57.71	67.91
Bra021589.1-P	Field mustard	cytosol	58.5	67.89
CDY20100	Canola	cytosol	58.5	67.89
KRH25681	Soybean	cytosol	58.1	67.74
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	58.1	67.74
PGSC0003DMT400020208	Potato	cytosol	58.1	67.74
Os05t0564400-02	Rice	plasma membrane	58.1	67.74
AT3G15060.1	Thale cress	cytosol	58.1	67.74
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	58.1	67.74
TraesCS7B01G200600.1	Wheat	cytosol	57.71	67.59
KRH30863	Soybean	cytosol	57.71	67.28
KRH55839	Soybean	endoplasmic reticulum	57.71	67.28
TraesCS5D01G188900.1	Wheat	cytosol	57.31	67.13
TraesCS5B01G182200.1	Wheat	cytosol	57.31	67.13
Solyc03g006270.2.1	Tomato	cytosol	57.31	67.13
PGSC0003DMT400033395	Potato	cytosol	57.31	67.13
TraesCS1D01G405900.1	Wheat	cytosol	57.31	67.13
TraesCS1B01G426300.1	Wheat	cytosol	57.31	67.13
TraesCS1A01G398400.1	Wheat	cytosol	57.31	67.13
VIT_19s0014g01820.t01	Wine grape	cytosol	57.31	66.82
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	56.92	66.67
Bra001581.1-P	Field mustard	cytosol	57.31	66.51
CDX82451	Canola	cytosol	57.31	66.51
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	56.92	66.36
Solyc12g014080.1.1	Tomato	cytosol	56.92	66.36
EES19950	Sorghum	cytosol	56.52	66.2
CDX90160	Canola	cytosol	56.13	66.05
Bra010860.1-P	Field mustard	cytosol	56.13	66.05
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	56.13	65.74
CDX75804	Canola	cytosol	56.52	65.6
Bra032914.1-P	Field mustard	cytosol	56.52	65.6
CDY34094	Canola	cytosol	56.52	65.6
CDY30818	Canola	cytosol	56.52	65.6
VIT_12s0028g02650.t01	Wine grape	cytosol	55.73	65.28
GSMUA_Achr3P15540_001	Banana	cytosol	55.73	65.28
CDY35757	Canola	cytosol	56.13	65.14
TraesCS3D01G244500.1	Wheat	cytosol	55.73	64.68
TraesCS3A01G247000.1	Wheat	cytosol	55.73	64.68
CDY15659	Canola	cytosol	55.73	64.68
CDX94631	Canola	cytosol	55.73	64.68
Bra030105.1-P	Field mustard	cytosol	55.73	64.68
GSMUA_Achr5P09130_001	Banana	cytosol	55.34	64.52
AT1G28550.1	Thale cress	cytosol	55.34	64.22
GSMUA_Achr8P27180_001	Banana	cytosol	54.55	63.89
AT2G33870.1	Thale cress	cytosol	54.94	63.76
GSMUA_Achr1P11940_001	Banana	cytosol	54.15	63.43
KRH27001	Soybean	cytosol, endoplasmic reticulum	54.55	63.3
CDX79548	Canola	cytosol	48.62	62.44
KRH22324	Soybean	cytosol, endoplasmic reticulum	53.75	62.39
Zm00001d043935_P001	Maize	cytosol	54.15	62.27
Bra022959.1-P	Field mustard	cytosol	53.36	61.93
GSMUA_Achr9P05610_001	Banana	cytosol	52.17	61.4
AT4G18430.1	Thale cress	cytosol	52.57	61.29
OQU87300	Sorghum	cytosol	52.96	61.19
CDX76522	Canola	cytosol	52.17	60.83
CDY01540	Canola	cytosol	52.17	60.83
CDY55638	Canola	cytosol	52.17	60.83
GSMUA_Achr3P15680_001	Banana	plasma membrane	52.17	60.83
Bra012597.1-P	Field mustard	cytosol	51.78	60.37
Bra021009.1-P	Field mustard	cytosol	51.78	60.37
GSMUA_Achr8P27780_001	Banana	cytosol	42.29	59.44
CDY60884	Canola	cytosol	50.2	56.95
GSMUA_Achr2P05630_001	Banana	cytosol	47.04	55.35
GSMUA_Achr6P18430_001	Banana	cytosol	49.01	55.11
GSMUA_Achr6P28910_001	Banana	cytosol	46.64	54.38
GSMUA_Achr5P28770_001	Banana	cytosol	45.85	53.46
GSMUA_Achr6P14930_001	Banana	cytosol	35.97	53.22
GSMUA_Achr7P26890_001	Banana	cytosol	38.34	51.87
GSMUA_Achr9P03770_001	Banana	cytosol	37.94	51.34
GSMUA_Achr8P02230_001	Banana	plasma membrane	43.08	50.46
GSMUA_Achr3P11810_001	Banana	cytosol	44.66	50.22
GSMUA_Achr3P01690_001	Banana	cytosol	43.08	49.77
GSMUA_Achr3P21290_001	Banana	cytosol	42.69	49.32
GSMUA_Achr8P18090_001	Banana	cytosol	42.29	49.08
GSMUA_Achr1P16540_001	Banana	cytosol	37.94	47.76
GSMUA_Achr1P19620_001	Banana	cytosol	43.48	47.62
GSMUA_Achr3P13850_001	Banana	cytosol	41.11	44.44
GSMUA_Achr9P00860_001	Banana	cytosol	38.74	42.61
TraesCS3B01G272300.1	Wheat	cytosol	55.73	40.75

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G10970_001	EnsemblPlants:GSMUA_Achr7P10970_001	EnsemblPlants:GSMUA_Achr7T10970_001
UniProt:M0TGI5	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296442E	:	:	:

Description

Ras-related protein Rab11B [Source:GMGC_GENE;Acc:GSMUA_Achr7G10970_001]

Coordinates

chr7:+:8818045..8820177

Molecular Weight (calculated)

29148.6 Da

IEP (calculated)

5.031

GRAVY (calculated)

-0.097

Length

253 amino acids

Sequence
(BLAST)

001: MAYRADEEYD YLFKVSKSTI GVEFATRTVH VDDKVVKAQI WDTAGQERYR AITSAYYRGA VGALVVYDVT RHATFENVER WLKELRSHTD PSIVVMLVGN
101: KADLRHLRSV SLEDAEVFAE KEKTFFMETS ALESLNVENA FTEVLSQIYR VTSKKSLDVG DDAAYQYGFL YEWSSFQSAD CKISSHFYIW LELKLDFVSK
201: SADCKISSHF YIWLELELDF VSKCLLQPMY RTMQSGMLFC YISDCSVVLP LTS

Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA

Arabidopsis Description

RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.