Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G185700.1 | |
| TraesCS3B01G215300.1 | |
| TraesCS3D01G189700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60860.1 | TraesCS3A01G185700.1 | AT3G06540.1 | 21798944 |
| AT5G60860.1 | TraesCS3B01G215300.1 | AT3G06540.1 | 21798944 |
| AT5G60860.1 | TraesCS3D01G189700.1 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G244500.1 | Wheat | cytosol | 63.01 | 100.0 |
| TraesCS3A01G247000.1 | Wheat | cytosol | 63.01 | 100.0 |
| OQU87300 | Sorghum | cytosol | 55.78 | 88.13 |
| Zm00001d043935_P001 | Maize | cytosol | 55.2 | 86.82 |
| TraesCS5B01G182200.1 | Wheat | cytosol | 51.45 | 82.41 |
| TraesCS7B01G200600.1 | Wheat | cytosol | 50.87 | 81.48 |
| AT5G60860.1 | Thale cress | cytosol | 50.29 | 80.18 |
| KRH30863 | Soybean | cytosol | 50.29 | 80.18 |
| KRH20359 | Soybean | cytosol, endoplasmic reticulum | 50.29 | 80.18 |
| TraesCS1B01G426300.1 | Wheat | cytosol | 50.0 | 80.09 |
| VIT_10s0003g00550.t01 | Wine grape | cytosol | 50.0 | 79.72 |
| KRH32712 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 49.42 | 78.8 |
| KRH50137 | Soybean | cytosol, mitochondrion | 49.42 | 78.8 |
| CDX94631 | Canola | cytosol | 49.42 | 78.44 |
| Bra030105.1-P | Field mustard | cytosol | 49.42 | 78.44 |
| VIT_19s0014g01820.t01 | Wine grape | cytosol | 49.13 | 78.34 |
| Os05t0564400-02 | Rice | plasma membrane | 49.13 | 78.34 |
| CDX75804 | Canola | cytosol | 49.13 | 77.98 |
| CDX82451 | Canola | cytosol | 49.13 | 77.98 |
| CDY15659 | Canola | cytosol | 49.13 | 77.98 |
| Bra001581.1-P | Field mustard | cytosol | 49.13 | 77.98 |
| Solyc12g010790.1.1 | Tomato | cytosol, nucleus, unclear | 48.84 | 77.88 |
| PGSC0003DMT400024319 | Potato | cytosol | 48.84 | 77.88 |
| PGSC0003DMT400020208 | Potato | cytosol | 48.84 | 77.88 |
| Solyc07g053480.2.1 | Tomato | cytosol, plastid | 48.84 | 77.88 |
| AT3G15060.1 | Thale cress | cytosol | 48.84 | 77.88 |
| Bra010860.1-P | Field mustard | cytosol | 48.27 | 77.67 |
| CDX90160 | Canola | cytosol | 48.27 | 77.67 |
| Bra032914.1-P | Field mustard | cytosol | 48.84 | 77.52 |
| CDY34094 | Canola | cytosol | 48.84 | 77.52 |
| CDY30818 | Canola | cytosol | 48.84 | 77.52 |
| CDY35757 | Canola | cytosol | 48.84 | 77.52 |
| KRH25681 | Soybean | cytosol | 48.55 | 77.42 |
| PGSC0003DMT400033395 | Potato | cytosol | 48.27 | 77.31 |
| Solyc03g006270.2.1 | Tomato | cytosol | 48.27 | 77.31 |
| AT1G28550.1 | Thale cress | cytosol | 48.55 | 77.06 |
| KRH55839 | Soybean | endoplasmic reticulum | 48.27 | 76.96 |
| Solyc12g014080.1.1 | Tomato | cytosol | 48.27 | 76.96 |
| PGSC0003DMT400039780 | Potato | cytosol, mitochondrion | 48.27 | 76.96 |
| PGSC0003DMT400058784 | Potato | cytosol | 47.69 | 76.74 |
| Solyc10g008840.2.1 | Tomato | cytosol | 47.69 | 76.74 |
| VIT_12s0028g02650.t01 | Wine grape | cytosol | 47.4 | 75.93 |
| AT2G33870.1 | Thale cress | cytosol | 47.4 | 75.23 |
| Bra021589.1-P | Field mustard | cytosol | 47.4 | 75.23 |
| CDY20100 | Canola | cytosol | 47.4 | 75.23 |
| AT4G18430.1 | Thale cress | cytosol | 47.11 | 75.12 |
| CDX76522 | Canola | cytosol | 46.82 | 74.65 |
| Bra021009.1-P | Field mustard | cytosol | 46.53 | 74.19 |
| CDX79548 | Canola | cytosol | 42.2 | 74.11 |
| Bra022959.1-P | Field mustard | cytosol | 46.53 | 73.85 |
| TraesCS7B01G273300.1 | Wheat | plastid | 46.24 | 73.73 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 40.75 | 73.44 |
| CDY55638 | Canola | cytosol | 45.95 | 73.27 |
| CDY01540 | Canola | cytosol | 45.95 | 73.27 |
| KRH27001 | Soybean | cytosol, endoplasmic reticulum | 45.95 | 72.94 |
| Bra012597.1-P | Field mustard | cytosol | 45.66 | 72.81 |
| KRH22324 | Soybean | cytosol, endoplasmic reticulum | 45.38 | 72.02 |
| CDY60884 | Canola | cytosol | 43.06 | 66.82 |
| TraesCS3B01G324300.1 | Wheat | cytosol, golgi | 42.49 | 66.52 |
| TraesCS5B01G530800.1 | Wheat | cytosol | 41.33 | 64.13 |
| TraesCS3B01G396200.1 | Wheat | cytosol, golgi | 39.6 | 63.43 |
| TraesCS1B01G018900.1 | Wheat | cytosol | 40.75 | 63.23 |
| TraesCS5B01G498600.1 | Wheat | cytosol, plastid | 39.02 | 62.79 |
| TraesCS1B01G150900.1 | Wheat | cytosol | 37.28 | 59.45 |
| TraesCS1B01G152100.1 | Wheat | cytosol | 36.13 | 57.87 |
| TraesCS5B01G171900.1 | Wheat | cytosol | 37.28 | 57.08 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 40.75 | 55.73 |
| TraesCS7B01G287900.1 | Wheat | cytosol | 33.81 | 52.23 |
| TraesCS5B01G316300.1 | Wheat | cytosol | 34.39 | 47.98 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF872 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS3B01G272300 |
| EnsemblPlants:TraesCS3B01G272300.1 | TIGR:cd01868 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:-:438537015..438538422
Molecular Weight (calculated)
38662.7 Da
IEP (calculated)
9.471
GRAVY (calculated)
-0.540
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVHACPVRS VTETKPGPGQ RAARWSSSSL AWLSLPPHHT TPHETNTIRG DPFFPSLRHF SPKRTQLKRS ETRRAAPRCL CISWLYLAQE ERRGEARGEG
101: KEIKSDQTVG NHRLIEQRRR RGSRRGGGMA VAYRAEEEYD YLFKVVLIGD SGVGKSNLLS RFARDEFSLD TRSTIGVEFA TKTVRVDGKL VKAQIWDTAG
201: QERYRAITSA YYRGAVGALV VYDVTRHITF ENAERWLTEL RDHTDANIVV MLVGNKADLR HLRAVSPEEA RAFAERHRTF SMETSALEAT NVEDAFTEVL
301: GEIYRVVSKK ALDIGDDPAA PPRGKTIDVG GKDDVTPVNT GGCCSA
101: KEIKSDQTVG NHRLIEQRRR RGSRRGGGMA VAYRAEEEYD YLFKVVLIGD SGVGKSNLLS RFARDEFSLD TRSTIGVEFA TKTVRVDGKL VKAQIWDTAG
201: QERYRAITSA YYRGAVGALV VYDVTRHITF ENAERWLTEL RDHTDANIVV MLVGNKADLR HLRAVSPEEA RAFAERHRTF SMETSALEAT NVEDAFTEVL
301: GEIYRVVSKK ALDIGDDPAA PPRGKTIDVG GKDDVTPVNT GGCCSA
001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA
Arabidopsis Description
RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.