Factsheet for TraesCS7B01G273300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G368300.1	Wheat	cytosol	99.08	99.08
TraesCS7A01G354400.1	Wheat	golgi	99.08	99.08
EER89913	Sorghum	cytosol	95.39	95.39
Zm00001d046313_P001	Maize	plastid	94.47	94.47
Os06t0551400-01	Rice	cytosol, golgi, plasma membrane, plastid	93.55	93.55
HORVU7Hr1G089120.1	Barley	cytosol	98.16	86.23
TraesCS5B01G182200.1	Wheat	cytosol	79.72	80.09
TraesCS3B01G324300.1	Wheat	cytosol, golgi	80.18	78.73
TraesCS1B01G426300.1	Wheat	cytosol	78.34	78.7
TraesCS7B01G200600.1	Wheat	cytosol	78.34	78.7
Zm00001d037004_P002	Maize	cytosol	95.39	72.13
TraesCS3B01G396200.1	Wheat	cytosol, golgi	67.74	68.06
TraesCS5B01G498600.1	Wheat	cytosol, plastid	67.28	67.91
TraesCS1B01G018900.1	Wheat	cytosol	68.2	66.37
TraesCS5B01G530800.1	Wheat	cytosol	65.9	64.13
TraesCS1B01G150900.1	Wheat	cytosol	61.75	61.75
TraesCS1B01G152100.1	Wheat	cytosol	58.53	58.8
TraesCS5B01G171900.1	Wheat	cytosol	60.83	58.41
TraesCS7B01G287900.1	Wheat	cytosol	53.92	52.23
TraesCS5B01G316300.1	Wheat	cytosol	54.38	47.58
TraesCS3B01G272300.1	Wheat	cytosol	73.73	46.24

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS7B01G273300
EnsemblPlants:TraesCS7B01G273300.1	TIGR:cd01868	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:501508499..501511234

Molecular Weight (calculated)

23967.2 Da

IEP (calculated)

5.438

GRAVY (calculated)

-0.335

Length

217 amino acids

Sequence
(BLAST)

001: MAAGYRAEDD YDYLFKVVLI GDSGVGKSNL LSRFTRNEFS LESKSTIGVE FATRSLQVDG KVVKAQIWDT AGQERYRAIT SAYYRGAVGA LLVYDVTRHA
101: TFENAERWLK ELRDHTDPNI VVMLVGNKSD LRHLVAVPTD EGKSFAERES LYFMETSALE STNVEDAFAE VLKQIYRIVS KRAVEAGEES AAGPGKGEKI
201: NMKDDVSAVK KGGCCSS

Best Arabidopsis Sequence Match ( AT5G45750.1 )
(BLAST)

001: MAGYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSL ESKSTIGVEF ATRSLNVDDK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVETWLKE LRNHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAEKESL YFMETSALEA TNVENAFAEV LTQIHHIVSK KAMEAASESA NVPSKGDKID
201: IGKDVSAVKK GGCCSN

Arabidopsis Description

RABA1CRABA1c [Source:UniProtKB/TrEMBL;Acc:A0A178UDB2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.