Factsheet for Bra011818.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69836	Canola	cytosol	100.0	99.55
AT4G39990.1	Thale cress	cytosol	91.48	91.07
Bra037810.1-P	Field mustard	cytosol	83.41	82.67
Zm00001d014278_P001	Maize	extracellular, plasma membrane	75.78	77.88
Os10t0377400-01	Rice	cytosol	75.34	77.78
Bra009040.1-P	Field mustard	cytosol	77.13	77.13
GSMUA_Achr3P01690_001	Banana	cytosol	75.34	76.71
KRH59301	Soybean	cytosol, endoplasmic reticulum	78.48	76.42
TraesCS1D01G136900.1	Wheat	cytosol	73.99	76.39
TraesCS1B01G152100.1	Wheat	cytosol	73.99	76.39
TraesCS1A01G131500.2	Wheat	cytosol	73.99	76.39
GSMUA_Achr3P21290_001	Banana	cytosol	74.89	76.26
OQU91938	Sorghum	cytosol	73.99	76.04
GSMUA_Achr8P18090_001	Banana	cytosol	73.54	75.23
Zm00001d028002_P001	Maize	mitochondrion	72.2	74.19
EER92725	Sorghum	cytosol	72.2	74.19
Zm00001d048222_P001	Maize	extracellular, plasma membrane	71.75	73.73
KRH43151	Soybean	cytosol, endoplasmic reticulum	75.34	70.89
Bra001439.1-P	Field mustard	cytosol	66.37	66.97
Bra037516.1-P	Field mustard	cytosol	66.82	66.82
Bra038701.1-P	Field mustard	cytosol	66.37	66.67
Bra020006.1-P	Field mustard	cytosol	58.74	60.37
Bra002589.1-P	Field mustard	cytosol	57.4	58.99
HORVU1Hr1G034400.4	Barley	plasma membrane	72.2	58.97
Bra018190.1-P	Field mustard	cytosol	56.95	58.53
Bra020334.1-P	Field mustard	cytosol	56.95	58.53
Bra010860.1-P	Field mustard	cytosol	56.05	58.14
Bra015578.1-P	Field mustard	cytosol	56.05	57.87
Bra026016.1-P	Field mustard	cytosol	56.05	57.87
Bra021589.1-P	Field mustard	cytosol	56.05	57.34
Bra032914.1-P	Field mustard	cytosol	55.61	56.88
Bra030105.1-P	Field mustard	cytosol	55.61	56.88
Bra001581.1-P	Field mustard	cytosol	55.16	56.42
Bra033277.1-P	Field mustard	cytosol	59.64	56.12
Bra032424.1-P	Field mustard	cytosol	55.61	55.61
Bra034771.1-P	Field mustard	cytosol	65.47	55.51
Bra022959.1-P	Field mustard	cytosol	54.26	55.5
Bra021009.1-P	Field mustard	cytosol	52.91	54.38
Bra012597.1-P	Field mustard	cytosol	52.47	53.92
Bra031573.1-P	Field mustard	cytosol	55.16	48.05

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra011818	EnsemblPlants:Bra011818.1	EnsemblPlants:Bra011818.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
GO:GO:0019900	GO:GO:0031901	GO:GO:0032456	GO:GO:0032588	GO:GO:0035619	GO:GO:0042546
UniProt:M4D5R1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002546238	SEG:seg

Description

AT4G39990 (E=9e-108) ATRABA4B, ATRAB11G, ATGB3, RABA4B | RABA4B (RAB GTPASE HOMOLOG A4B); GTP binding

Coordinates

chrA01:+:389285..390160

Molecular Weight (calculated)

24227.7 Da

IEP (calculated)

5.421

GRAVY (calculated)

-0.243

Length

223 amino acids

Sequence
(BLAST)

001: MAGGGGYGGA SGKVDYVFKV VLIGDSAVGK SQLLARFARD EFSLDSKATI GVEFQTRTLT IEEKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: KRETFDHIPR WLEELRAHAD KNIVIILIGN KSDLEDQRAI PTEDAKEFAE KEGLFFLETS ALNATNVENS FNTLMMEIFN TVNKKSLSSA ESNNPGSLAG
201: KKIVIPGPGQ EVPAKTSTCC SSA

Best Arabidopsis Sequence Match ( AT4G39990.1 )
(BLAST)

001: MAGGGGYGGA SGKVDYVFKV VLIGDSAVGK SQLLARFARD EFSMDSKATI GVEFQTRTLS IEQKSIKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDMT
101: KRETFEHIPR WLEELRAHAD KNIVIILIGN KSDLEDQRAV PTEDAKEFAE KEGLFFLETS ALNATNVENS FNTLMTQIYN TVNKKNLASE GDSNNPGSLA
201: GKKILIPGSG QEIPAKTSTC CTSS

Arabidopsis Description

RABA4BRas-related protein RABA4b [Source:UniProtKB/Swiss-Prot;Acc:Q9SMQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.