Factsheet for Bra020334.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32661	Canola	cytosol	100.0	100.0
CDY02867	Canola	cytosol	99.54	99.54
AT5G59150.1	Thale cress	cytosol	94.47	94.47
Bra002589.1-P	Field mustard	cytosol	94.01	94.01
Bra018190.1-P	Field mustard	cytosol	90.78	90.78
KRH29738	Soybean	endoplasmic reticulum	86.18	86.57
KRH24729	Soybean	endoplasmic reticulum, nucleus	85.71	86.11
Solyc06g005810.2.1	Tomato	cytosol, unclear	85.25	85.65
PGSC0003DMT400053686	Potato	cytosol	85.25	85.65
Bra015578.1-P	Field mustard	cytosol	85.25	85.65
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	84.79	84.79
Solyc06g076450.2.1	Tomato	plastid	83.41	84.19
PGSC0003DMT400078200	Potato	cytosol	83.41	84.19
Bra020006.1-P	Field mustard	cytosol	72.35	72.35
Bra031573.1-P	Field mustard	cytosol	82.95	70.31
Bra026016.1-P	Field mustard	cytosol	68.2	68.52
Bra010860.1-P	Field mustard	cytosol	65.44	66.05
Bra001581.1-P	Field mustard	cytosol	65.9	65.6
Bra030105.1-P	Field mustard	cytosol	64.98	64.68
Bra032914.1-P	Field mustard	cytosol	64.52	64.22
Bra021589.1-P	Field mustard	cytosol	64.06	63.76
Bra022959.1-P	Field mustard	cytosol	63.59	63.3
Bra037516.1-P	Field mustard	cytosol	64.52	62.78
Bra012597.1-P	Field mustard	cytosol	62.67	62.67
Bra032424.1-P	Field mustard	cytosol	64.06	62.33
Bra021009.1-P	Field mustard	cytosol	62.21	62.21
Bra001439.1-P	Field mustard	cytosol	60.37	59.28
Bra009040.1-P	Field mustard	cytosol	60.83	59.19
Bra038701.1-P	Field mustard	cytosol	59.91	58.56
Bra011818.1-P	Field mustard	cytosol	58.53	56.95
Bra037810.1-P	Field mustard	cytosol	58.53	56.44
Bra034771.1-P	Field mustard	cytosol	59.91	49.43
Bra033277.1-P	Field mustard	cytosol	52.53	48.1

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra020334	EnsemblPlants:Bra020334.1	EnsemblPlants:Bra020334.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4DUZ1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000254367C	SEG:seg

Description

AT5G59150 (E=2e-107) ATRABA2D, ATRAB-A2D | ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding

Coordinates

chrA02:+:6274177..6275702

Molecular Weight (calculated)

23950.3 Da

IEP (calculated)

6.284

GRAVY (calculated)

-0.294

Length

217 amino acids

Sequence
(BLAST)

001: MTHRVEQDYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGAFL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVAEEDG RSLAETEGLS FLETSALEST NVEKSFQTVL TEIYKIISKK ALAAQEAAGA NSAIPGQGTT
201: INVEDTSGAA KRGCCST

Best Arabidopsis Sequence Match ( AT5G59150.1 )
(BLAST)

001: MAHRVEQDYD YLFKIVLIGD SGVGKTNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI MMAGNKADLN HLRSVAEEDG QTLAETEGLS FLETSALEAT NVEKAFQTVL AEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVEDTSGAG KRGCCST

Arabidopsis Description

RABA2DRas-related protein RABA2d [Source:UniProtKB/Swiss-Prot;Acc:Q9FIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.