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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001418.1-P
Bra002620.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra019475.1-P
Bra032216.1-P
Bra033830.1-P
Bra038265.1-P
Bra038676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17720.1 Bra014069.1-P AT1G47260.1 21798944
AT4G17720.1 Bra032216.1-P AT1G47260.1 21798944
AT4G17720.1 Bra001418.1-P AT3G11730.1 21798944
AT4G17720.1 Bra038676.1-P AT3G11730.1 21798944
AT4G17720.1 Bra019475.1-P AT3G46060.1 21798944
AT4G17720.1 Bra033830.1-P AT3G46060.1 21798944
AT4G17720.1 Bra038265.1-P AT3G46060.1 21798944
AT4G17720.1 Bra010452.1-P AT4G25680.1 21798944
AT4G17720.1 Bra013908.1-P AT4G25680.1 21798944
AT4G17720.1 Bra013910.1-P AT4G25680.1 21798944
AT4G17720.1 Bra002620.1-P AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90455 Canola cytosol 100.0 100.0
AT4G17720.1 Thale cress cytosol, nucleus, plastid 67.79 45.05
Bra012646.1-P Field mustard nucleus 67.31 44.87
Bra040177.1-P Field mustard nucleus 63.94 44.04
GSMUA_Achr9P23330_001 Banana nucleus, peroxisome, plastid 49.52 42.21
VIT_02s0012g01860.t01 Wine grape cytosol 56.25 41.49
KRH74377 Soybean endoplasmic reticulum 54.81 40.86
GSMUA_AchrUn_... Banana cytosol, extracellular, nucleus 54.33 40.65
Solyc08g076530.2.1 Tomato plastid 54.81 40.57
KRH39571 Soybean nucleus 54.33 40.36
PGSC0003DMT400038377 Potato cytosol 54.33 40.21
Zm00001d031612_P001 Maize cytosol 42.79 37.08
Zm00001d026150_P001 Maize cytosol 42.79 37.08
Bra024988.1-P Field mustard vacuole 57.21 35.74
Bra006373.1-P Field mustard cytosol 44.23 35.25
EER89059 Sorghum cytosol 45.19 34.94
HORVU7Hr1G003710.1 Barley cytosol 43.75 34.6
Bra008589.1-P Field mustard cytosol 43.27 34.35
Os06t0112400-01 Rice plasma membrane 42.79 34.1
Bra023585.1-P Field mustard nucleus 41.35 33.99
TraesCS4A01G458600.1 Wheat cytosol, nucleus, plastid 42.79 33.46
TraesCS7D01G027100.1 Wheat plastid 42.79 33.46
Zm00001d045559_P002 Maize cytosol, endoplasmic reticulum, nucleus 44.23 33.09
Os04t0594400-01 Rice plasma membrane 48.56 32.17
GSMUA_Achr8P14700_001 Banana plastid 47.12 32.13
Zm00001d026206_P001 Maize cytosol, nucleus, plastid 47.6 31.53
TraesCS2D01G444000.1 Wheat extracellular 47.6 31.43
TraesCS2B01G466100.1 Wheat extracellular 47.6 31.23
TraesCS2A01G445100.1 Wheat extracellular 47.12 30.91
Zm00001d002475_P001 Maize extracellular 46.63 30.89
GSMUA_Achr5P14070_001 Banana cytosol, nucleus, plastid 40.87 30.58
EES12769 Sorghum cytosol 46.15 30.57
TraesCS7A01G030900.2 Wheat plastid 42.79 28.25
Zm00001d031493_P001 Maize cytosol, mitochondrion, plastid 43.75 28.0
Zm00001d054082_P001 Maize cytosol 37.5 27.56
Zm00001d035920_P002 Maize extracellular, vacuole 45.19 27.17
Os04t0624800-01 Rice nucleus 46.63 25.8
Bra039914.1-P Field mustard cytosol 31.73 25.1
Zm00001d046215_P001 Maize cytosol 37.5 24.38
TraesCS6D01G249000.1 Wheat nucleus, plastid 44.71 24.35
Zm00001d046992_P001 Maize cytosol 37.5 23.85
TraesCS6B01G292900.1 Wheat endoplasmic reticulum, extracellular 44.71 23.43
TraesCS6A01G265600.1 Wheat extracellular 44.23 23.17
OQU85574 Sorghum nucleus 43.27 23.02
Zm00001d051524_P002 Maize nucleus 41.35 21.34
Bra019660.1-P Field mustard cytosol 24.04 20.49
Zm00001d014267_P001 Maize nucleus 40.87 20.14
Bra016705.1-P Field mustard nucleus 23.08 19.67
Bra001017.1-P Field mustard cytosol, nucleus, plastid 20.19 16.67
Protein Annotations
EnsemblPlants:Bra012647.1EnsemblPlants:Bra012647.1-PEnsemblPlantsGene:Bra012647PANTHER:PTHR44136PANTHER:PTHR44136:SF5UniParc:UPI00025409AB
UniProt:M4D837MapMan:35.1::::
Description
AT4G17720 (E=1e-036) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA03:-:22948896..22950720
Molecular Weight (calculated)
22506.8 Da
IEP (calculated)
8.797
GRAVY (calculated)
-0.411
Length
208 amino acids
Sequence
(BLAST)
001: MEKAALIFIG KHGQSICVDT DCECPVQNYG ALPDDTNCGV AACIDYCKAK GEERKYSSKS LRAGESVLRK AEDVVSSMLA KGFILGKDAI AKAKSVEEKH
101: QLTSTASAKV ASLDKKLGFH RQDQHRNSRA IAATEQSVSN AGSAIMKNRY VLTGATWVTG AFNKVAKVAE EVGQKAKEKV GMAEEEDKRK VVDEFARVHL
201: SESPKINV
Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.