Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74377 | Soybean | endoplasmic reticulum | 95.36 | 95.7 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 75.71 | 75.18 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 73.57 | 74.1 |
| Solyc08g076530.2.1 | Tomato | plastid | 72.5 | 72.24 |
| PGSC0003DMT400038377 | Potato | cytosol | 72.5 | 72.24 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 61.79 | 70.9 |
| CDY01476 | Canola | cytosol | 33.21 | 65.03 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 60.71 | 63.91 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 60.0 | 63.88 |
| CDY01477 | Canola | cytosol | 68.93 | 63.7 |
| Os06t0112400-01 | Rice | plasma membrane | 59.29 | 63.6 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 71.07 | 63.58 |
| TraesCS7D01G027100.1 | Wheat | plastid | 60.36 | 63.53 |
| CDY60787 | Canola | nucleus | 68.57 | 63.37 |
| Bra040177.1-P | Field mustard | nucleus | 68.21 | 63.24 |
| EER89059 | Sorghum | cytosol | 60.71 | 63.2 |
| AT5G46870.1 | Thale cress | nucleus | 66.43 | 63.05 |
| CDX78795 | Canola | nucleus | 68.21 | 63.04 |
| CDX90453 | Canola | cytosol | 69.29 | 62.78 |
| Bra012646.1-P | Field mustard | nucleus | 69.64 | 62.5 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 58.93 | 59.35 |
| CDY01473 | Canola | nucleus | 41.07 | 58.08 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 61.43 | 56.39 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 55.36 | 55.76 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 62.14 | 55.41 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.0 | 54.65 |
| KRH24024 | Soybean | nucleus | 56.79 | 54.45 |
| CDX90455 | Canola | cytosol | 40.36 | 54.33 |
| Bra012647.1-P | Field mustard | cytosol | 40.36 | 54.33 |
| Bra024988.1-P | Field mustard | vacuole | 64.29 | 54.05 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 64.64 | 54.03 |
| EES12769 | Sorghum | cytosol | 60.36 | 53.82 |
| TraesCS7A01G030900.2 | Wheat | plastid | 60.36 | 53.65 |
| Zm00001d002475_P001 | Maize | extracellular | 60.0 | 53.5 |
| Os04t0594400-01 | Rice | plasma membrane | 60.0 | 53.5 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 59.29 | 52.7 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 58.93 | 52.05 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 58.57 | 51.73 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 62.14 | 50.29 |
| Zm00001d054082_P001 | Maize | cytosol | 47.86 | 47.35 |
| Zm00001d031612_P001 | Maize | cytosol | 40.36 | 47.08 |
| Zm00001d026150_P001 | Maize | cytosol | 40.36 | 47.08 |
| KRH70369 | Soybean | cytosol | 51.79 | 46.77 |
| KRH49688 | Soybean | nucleus | 51.07 | 46.13 |
| Os04t0624800-01 | Rice | nucleus | 56.79 | 42.29 |
| Zm00001d046992_P001 | Maize | cytosol | 49.29 | 42.2 |
| KRG94865 | Soybean | cytosol | 36.43 | 41.3 |
| KRH06674 | Soybean | cytosol | 40.36 | 40.94 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 55.71 | 40.84 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 46.07 | 39.69 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 56.07 | 39.55 |
| OQU85574 | Sorghum | nucleus | 54.64 | 39.13 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 55.36 | 39.04 |
| Zm00001d051524_P002 | Maize | nucleus | 52.86 | 36.72 |
| Zm00001d014267_P001 | Maize | nucleus | 52.14 | 34.6 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 31.43 | 34.51 |
| KRH40110 | Soybean | cytosol | 31.79 | 34.5 |
| KRH69305 | Soybean | nucleus | 33.57 | 32.3 |
| Zm00001d046215_P001 | Maize | cytosol | 35.0 | 30.62 |
Protein Annotations
| EntrezGene:100797009 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02005943 | EnsemblPlantsGene:GLYMA_09G206900 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1L4Z3 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH39571 | ProteinID:KRH39571 | ProteinID:KRH39571.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0000E64948 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:43100558..43104390
Molecular Weight (calculated)
29804.1 Da
IEP (calculated)
5.950
GRAVY (calculated)
-0.334
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIKTVKVSN VSLGATEQDI KEFFSFSGDI EYVELQSHDE RSQIAFITFK DSQGAETAVL LSGATIVDMP VTISLDPDYQ LPPAALASPV RETRTPGGGA
101: DSAFRKAEDV VSGMLAKGFI LGKDAVNKAK TFDEKHQLSS TASAKVASFD QKIGLSEKIS AGATVVGDRV REVDQKFQVS EKTKSAFAAA EQTVSNAGSA
201: IMKNRYVLTG ASWVTGAFSK VSKAAGEVGQ KTKEKVESAE EQQKRKVEDQ YAQVLSESPK AAEASEQKSS KPAPAQGLIL
101: DSAFRKAEDV VSGMLAKGFI LGKDAVNKAK TFDEKHQLSS TASAKVASFD QKIGLSEKIS AGATVVGDRV REVDQKFQVS EKTKSAFAAA EQTVSNAGSA
201: IMKNRYVLTG ASWVTGAFSK VSKAAGEVGQ KTKEKVESAE EQQKRKVEDQ YAQVLSESPK AAEASEQKSS KPAPAQGLIL
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.