CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94865	Soybean	cytosol	82.61	92.31
VIT_08s0032g00290.t01	Wine grape	cytosol	72.83	75.0
Solyc10g076890.1.1	Tomato	cytosol	70.65	71.43
PGSC0003DMT400018578	Potato	cytosol	70.65	70.91
AT5G32450.1	Thale cress	cytosol	68.12	70.41
GSMUA_Achr4P10680_001	Banana	cytosol	66.67	69.43
CDY38176	Canola	cytosol	64.86	68.06
Bra039914.1-P	Field mustard	cytosol	64.49	67.68
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	64.49	66.92
EER93456	Sorghum	cytosol	65.94	65.94
Os03t0748900-01	Rice	cytosol	65.58	65.11
GSMUA_Achr8P04640_001	Banana	cytosol	62.32	64.66
TraesCS5B01G392900.1	Wheat	cytosol	63.41	64.34
TraesCS5A01G387800.1	Wheat	cytosol	63.41	64.34
Zm00001d013271_P003	Maize	cytosol	64.86	63.7
TraesCS5D01G397700.2	Wheat	cytosol	62.32	62.09
CDY60084	Canola	cytosol, nucleus, plastid	13.77	50.0
HORVU5Hr1G095000.1	Barley	nucleus	62.68	46.88
KRH74377	Soybean	endoplasmic reticulum	42.39	41.94
GSMUA_AchrUn_...	Banana	cytosol	23.55	40.37
KRH39571	Soybean	nucleus	40.94	40.36
KRH49688	Soybean	nucleus	41.3	36.77
KRH70369	Soybean	cytosol	40.22	35.81
KRH24024	Soybean	nucleus	36.59	34.59
KRH69305	Soybean	nucleus	33.7	31.96
KRH40110	Soybean	cytosol	28.99	31.01
Zm00001d033453_P001	Maize	cytosol	37.32	30.65
KRH01160	Soybean	cytosol, nucleus, plastid	28.26	30.59

Protein Annotations

EntrezGene:100812446	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02009856	EnsemblPlantsGene:GLYMA_16G038800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MKZ6	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH06674	ProteinID:KRH06674	ProteinID:KRH06674.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44136	PANTHER:PTHR44136:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000233E918	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:3652966..3656996

Molecular Weight (calculated)

29936.6 Da

IEP (calculated)

9.738

GRAVY (calculated)

-0.247

Length

276 amino acids

Sequence
(BLAST)

001: MQVTETRTVQ VKQLSDLAGV REIHEFFSFS GEIEHVEILS EDGKSKTAYV TFKDPKALEI ALLLSGATIV DQVVKITPAE NYVPNREMQE VRVVENAINV
101: VPSENSENVS SNIEEGIASP TNRRIYLSRA QDAVTNMLAK GSAIRQDAVN KAKAFDEKHQ LTANASAKVI SFDKRVGLTE KLTVGIAAMN QKVKSVDQRL
201: QVSDKTMAAI IAAERKINDT GSAVKTSRYV TAGTAWFNGA FSKVAKAGHV ASSKTREKFH LAVSNLTSKE PSVAAA

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.