Factsheet for GSMUA_Achr4P10680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P04640_001	Banana	cytosol	76.98	76.69
VIT_08s0032g00290.t01	Wine grape	cytosol	72.83	72.01
EER93456	Sorghum	cytosol	72.45	69.57
Os03t0748900-01	Rice	cytosol	72.45	69.06
TraesCS5B01G392900.1	Wheat	cytosol	69.81	68.01
Zm00001d013271_P003	Maize	cytosol	71.7	67.62
Bra039914.1-P	Field mustard	cytosol	66.79	67.3
CDY38176	Canola	cytosol	66.79	67.3
AT5G32450.1	Thale cress	cytosol	67.55	67.04
Solyc10g076890.1.1	Tomato	cytosol	69.06	67.03
KRH06674	Soybean	cytosol	69.43	66.67
PGSC0003DMT400018578	Potato	cytosol	69.06	66.55
TraesCS5A01G387800.1	Wheat	cytosol	68.3	66.54
KRG94865	Soybean	cytosol	61.51	65.99
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	66.04	65.79
TraesCS5D01G397700.2	Wheat	cytosol	67.92	64.98
CDY60084	Canola	cytosol, nucleus, plastid	15.09	52.63
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	47.92	52.05
HORVU5Hr1G095000.1	Barley	nucleus	68.3	49.05
GSMUA_AchrUn_...	Banana	cytosol	29.43	48.45
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	48.3	46.04
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	41.89	39.93
GSMUA_Achr8P14700_001	Banana	plastid	45.66	39.67
GSMUA_Achr3P19960_001	Banana	cytosol	33.58	36.78
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	40.75	34.5
Zm00001d033453_P001	Maize	cytosol	41.51	32.74
GSMUA_Achr4P03340_001	Banana	nucleus	20.75	30.05

Protein Annotations

EnsemblPlants:GSMUA_Achr4P10680_001	EnsemblPlants:GSMUA_Achr4T10680_001	EnsemblPlantsGene:GSMUA_Achr4G10680_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44136	PANTHER:PTHR44136:SF3	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002964DF7	UniProt:M0SMT5	MapMan:35.1	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G10680_001]

Coordinates

chr4:+:7757524..7763353

Molecular Weight (calculated)

28611.0 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.189

Length

265 amino acids

Sequence
(BLAST)

001: METRTVQVGN ISDLAGEREI REFFSFSGDI EHLEIRGDAG TPRLAFVTFK DPKALEIALL LSGATIVDRI VSIAPVENYV PMVEQVEANE AEFTTPFGNN
101: VTYVEGKNSP NSGRVYVSKA HDVVSSMLAK GSALRQDAIN KAKAFDEKHQ LRANASAKVV SFDKRVGLSE KITVGISIVN EKVKSVDQKL HVSDKTMAAL
201: FAAEQKLNDT GTAVKSNRYV TAGTAWLNGA FGKVAKAGHV AGTRTREKFQ LAVSNLTEKD PVVAA

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.