CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008589.1-P	Field mustard	cytosol	99.23	98.47
CDX70721	Canola	cytosol	91.54	91.19
CDX78713	Canola	cytosol	91.15	90.8
AT5G16840.2	Thale cress	nucleus	85.38	85.38
CDY16974	Canola	plastid	97.69	79.87
CDX85485	Canola	plastid	85.0	70.16
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	62.69	58.63
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	55.0	58.61
Solyc03g097110.2.1	Tomato	nucleus	62.31	58.27
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	61.54	57.76
Os06t0112400-01	Rice	plasma membrane	57.69	57.47
HORVU7Hr1G003710.1	Barley	cytosol	57.31	56.65
EER89059	Sorghum	cytosol	58.46	56.51
TraesCS7D01G027100.1	Wheat	plastid	57.31	56.02
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	57.31	56.02
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	57.69	53.96
CDY01476	Canola	cytosol	29.23	53.15
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	56.54	52.88
CDY38083	Canola	nucleus	83.85	52.03
KRH24024	Soybean	nucleus	54.62	48.63
TraesCS7A01G030900.2	Wheat	plastid	57.31	47.3
CDX78795	Canola	nucleus	55.0	47.19
CDY60787	Canola	nucleus	54.23	46.53
CDY01477	Canola	cytosol	53.46	45.87
CDX90453	Canola	cytosol	53.46	44.98
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	47.69	44.6
PGSC0003DMT400069547	Potato	nucleus	58.08	44.41
Zm00001d035920_P002	Maize	extracellular, vacuole	58.08	43.64
CDY01473	Canola	nucleus	33.08	43.43
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	51.92	42.99
CDX90455	Canola	cytosol	34.23	42.79
GSMUA_Achr8P14700_001	Banana	plastid	50.0	42.62
EES12769	Sorghum	cytosol	51.15	42.36
Zm00001d002475_P001	Maize	extracellular	50.77	42.04
Os04t0594400-01	Rice	plasma membrane	50.77	42.04
TraesCS2D01G444000.1	Wheat	extracellular	50.77	41.9
TraesCS2A01G445100.1	Wheat	extracellular	50.77	41.64
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.08	41.44
Zm00001d054082_P001	Maize	cytosol	45.0	41.34
TraesCS2B01G466100.1	Wheat	extracellular	50.38	41.32
Solyc06g072770.2.1	Tomato	nucleus	57.69	41.21
CDY38176	Canola	cytosol	41.15	40.68
Zm00001d031612_P001	Maize	cytosol	37.31	40.42
Zm00001d026150_P001	Maize	cytosol	37.31	40.42
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	51.54	40.0
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	40.77	39.85
CDY49093	Canola	cytosol	37.31	39.59
CDY60084	Canola	cytosol, nucleus, plastid	11.54	39.47
CDY62016	Canola	nucleus	35.38	39.32
CDY01872	Canola	cytosol, plastid	40.77	37.32
CDX96860	Canola	nucleus	35.0	37.3
CDX84035	Canola	nucleus	35.0	37.3
Zm00001d046992_P001	Maize	cytosol	46.54	37.0
Os04t0624800-01	Rice	nucleus	50.38	34.84
OQU85574	Sorghum	nucleus	50.77	33.76
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	41.92	33.54
TraesCS6D01G249000.1	Wheat	nucleus, plastid	47.31	32.2
TraesCS6A01G265600.1	Wheat	extracellular	48.08	31.49
CDX74287	Canola	cytosol	30.38	31.35
Zm00001d051524_P002	Maize	nucleus	48.46	31.27
CDX91958	Canola	cytosol, nucleus, plastid	30.0	30.95
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	46.92	30.73
Zm00001d014267_P001	Maize	nucleus	48.08	29.62
Zm00001d046215_P001	Maize	cytosol	34.62	28.12

Protein Annotations

EnsemblPlants:CDX69415	EnsemblPlantsGene:GSBRNA2T00135384001	Gene3D:3.30.70.330	GO:A0A078BX84	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF6	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX69415	ProteinID:CDX69415.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF11B0	MapMan:35.1	:

Description

BnaA10g17640D

Coordinates

chrLK031790:-:121183..123140

Molecular Weight (calculated)

27164.7 Da

IEP (calculated)

5.967

GRAVY (calculated)

-0.317

Length

260 amino acids

Sequence
(BLAST)

001: MAIRSVKVGN LSSGATEHNI KEFFSFSGEV ENIDIQGGEH SAYVTFKDPQ GAETAVLLSG ASIADQSVTI ELAPNYTPPA APHAETQSGG GGAAEGVVQK
101: AEDVVSSMLA KGFILGKDAV GKAKAFDEKL GFTSTATAGV VSIDQKIGLS QKFTAGTTLV NDKIKEVDQS LHVSERTKSA YASAEQTVSS AGNAVMKNRY
201: VLTGVSWAAG AFSRVAKAAG EVSQKTKEKV EAEHPPQPSQ SQEQLPEGYA PIHSSEYSKK

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.