Factsheet for AT1G14340.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62016	Canola	nucleus	82.79	86.32
Bra019660.1-P	Field mustard	cytosol	86.07	86.07
CDX96860	Canola	nucleus	86.07	86.07
Bra016705.1-P	Field mustard	nucleus	84.84	84.84
CDY49093	Canola	cytosol	84.84	84.49
CDX84035	Canola	nucleus	84.02	84.02
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	64.34	63.82
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	59.84	59.59
GSMUA_Achr3P19960_001	Banana	cytosol	57.38	57.85
KRH69305	Soybean	nucleus	63.52	53.26
EES12950	Sorghum	cytosol, nucleus, plastid	51.23	51.23
Zm00001d026425_P003	Maize	cytosol	51.23	51.23
TraesCS2D01G523400.1	Wheat	nucleus	51.23	51.23
TraesCS2B01G551100.1	Wheat	nucleus	51.23	51.23
TraesCS2A01G521600.1	Wheat	nucleus	50.82	50.82
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	51.64	50.2
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	50.0	49.0
Solyc05g007200.2.1	Tomato	mitochondrion	59.43	47.54
AT3G01210.1	Thale cress	cytosol	46.31	45.38
Os04t0641400-02	Rice	plastid	52.46	44.6
AT5G16840.2	Thale cress	nucleus	38.11	35.77
AT5G32450.1	Thale cress	cytosol	36.48	33.33
AT1G67950.2	Thale cress	cytosol	36.07	31.54
AT5G46870.1	Thale cress	nucleus	35.25	29.15
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	36.48	28.43

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:837995	UniProt:A0A178W5T7	ProteinID:AEE29148.1	ArrayExpress:AT1G14340
EnsemblPlantsGene:AT1G14340	RefSeq:AT1G14340	TAIR:AT1G14340	RefSeq:AT1G14340-TAIR-G	EnsemblPlants:AT1G14340.1	TAIR:AT1G14340.1
EMBL:AY050919	EMBL:AY091417	Unigene:At.26546	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000504	InterPro:IPR012677
RefSeq:NP_563946.1	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OAP13860.1	PFAM:PF00076	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50102	PANTHER:PTHR44136
PANTHER:PTHR44136:SF7	UniProt:Q949S4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00000A9E57	InterPro:Vip1-like_RRM_plant	SEG:seg	:	:	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]

Coordinates

chr1:+:4897346..4899035

Molecular Weight (calculated)

26416.7 Da

IEP (calculated)

5.311

GRAVY (calculated)

-0.192

Length

244 amino acids

Sequence
(BLAST)

001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.