Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001017.1-P | Field mustard | cytosol, nucleus, plastid | 89.16 | 88.1 |
| CDX74287 | Canola | cytosol | 88.75 | 87.7 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 88.35 | 87.3 |
| KRH40110 | Soybean | cytosol | 54.22 | 52.33 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 53.41 | 52.16 |
| Solyc02g067390.2.1 | Tomato | cytosol | 51.41 | 50.2 |
| PGSC0003DMT400017749 | Potato | cytosol | 51.41 | 50.2 |
| AT1G14340.1 | Thale cress | nucleus | 45.38 | 46.31 |
| GSMUA_Achr3P19960_001 | Banana | cytosol | 44.98 | 46.28 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 43.78 | 44.67 |
| Zm00001d026425_P003 | Maize | cytosol | 43.37 | 44.26 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 43.37 | 44.26 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 42.97 | 43.85 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 42.57 | 43.44 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 43.37 | 43.03 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 41.77 | 41.77 |
| Os04t0641400-02 | Rice | plastid | 43.37 | 37.63 |
| AT5G32450.1 | Thale cress | cytosol | 33.33 | 31.09 |
| AT5G16840.2 | Thale cress | nucleus | 30.52 | 29.23 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 32.53 | 25.88 |
| AT5G46870.1 | Thale cress | nucleus | 30.12 | 25.42 |
| AT1G67950.2 | Thale cress | cytosol | 27.71 | 24.73 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:821275 | UniProt:A0A178VM00 | ProteinID:AAF26153.1 | ProteinID:AEE73625.1 |
| ProteinID:ANM65071.1 | ArrayExpress:AT3G01210 | EnsemblPlantsGene:AT3G01210 | RefSeq:AT3G01210 | TAIR:AT3G01210 | RefSeq:AT3G01210-TAIR-G |
| EnsemblPlants:AT3G01210.1 | TAIR:AT3G01210.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_001327068.1 | RefSeq:NP_186770.3 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP06285.1 | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF1 | UniProt:Q9MAD0 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SUPFAM:SSF54928 |
| UniParc:UPI00000AB541 | SEG:seg | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9MAD0]
Coordinates
chr3:+:71556..73407
Molecular Weight (calculated)
26412.1 Da
IEP (calculated)
5.927
GRAVY (calculated)
0.134
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPCGYVAQV TNLSPQATEK DVHRFFSHCG IVELVEITGC QGDALTAYVT FRDAYALDMA VLLSGATIVD QTVWISVYGV YLHESNNLRQ EEDYSVTVTR
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.