Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053093_P001 | Maize | cytosol, plastid | 92.86 | 90.22 |
| Os11t0549537-00 | Rice | mitochondrion, plastid | 52.6 | 66.94 |
| GSMUA_Achr4P00600_001 | Banana | cytosol, nucleus, plastid | 48.05 | 47.28 |
| EER89059 | Sorghum | cytosol | 39.94 | 45.72 |
| KRH49688 | Soybean | nucleus | 44.81 | 44.52 |
| KRH70369 | Soybean | cytosol | 44.48 | 44.19 |
| VIT_01s0011g06050.t01 | Wine grape | cytosol | 40.58 | 44.01 |
| OQU91106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 41.56 | 43.69 |
| AT1G67950.2 | Thale cress | cytosol | 36.04 | 39.78 |
| CDY01872 | Canola | cytosol, plastid | 34.42 | 37.32 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 28.57 | 36.07 |
| EES12769 | Sorghum | cytosol | 35.71 | 35.03 |
| EER93456 | Sorghum | cytosol | 29.87 | 33.33 |
| OQU85574 | Sorghum | nucleus | 33.77 | 26.6 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:C5Y3X9 | EnsemblPlants:EES09901 | ProteinID:EES09901 | ProteinID:EES09901.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR32343 | PANTHER:PTHR32343:SF10 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3005G145400 | SUPFAM:SSF54928 | UniParc:UPI0001A867A7 | RefSeq:XP_002450913.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:-:61059043..61061250
Molecular Weight (calculated)
32411.8 Da
IEP (calculated)
4.958
GRAVY (calculated)
-0.205
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVRLDPGYL RIGVAPAELC TSSPSSSASP QPCTSPNWTI DVSDVRTIKV TNVPLSATAE NMKEFFSFSG EIEYVEMRRD SETSQVAYVT FKEFHGADTA
101: LLLSGSSMCG DVPVNIAPVE DYELPPEAYS HSHPEERSPA PGTPTGEAVK KAEEVVSTML AKGFVLSKDA LRRAQSFDGR HQQLLSTATA RVASLDRRLG
201: LSDKFSLGTA AARGAARGVD ERFQVTERAW GAFSAAGEVV AGSPYASRGA AWVSAAVGAV ARAASDVGAM TMEKVVRAEE EGTAAEQGNA GRVDVHDGQV
301: AAAQHGAM
101: LLLSGSSMCG DVPVNIAPVE DYELPPEAYS HSHPEERSPA PGTPTGEAVK KAEEVVSTML AKGFVLSKDA LRRAQSFDGR HQQLLSTATA RVASLDRRLG
201: LSDKFSLGTA AARGAARGVD ERFQVTERAW GAFSAAGEVV AGSPYASRGA AWVSAAVGAV ARAASDVGAM TMEKVVRAEE EGTAAEQGNA GRVDVHDGQV
301: AAAQHGAM
001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSEHSFN GFSVKKAEDV VNIMVGRGYA LGKDAMEKAK AFDDRHNLIS NASATIASLD DKMGLSEKLS IGTTVVNEKL RDIDERYQVR
201: EITKSALAAA EETAISARTA LMANPYVSSG ASWFSNAFGA VTKAVKEKVE NGGEGRKEII TLDPSSPKVP AVVPVKLG
101: AVNYQLPPEA LALDSEHSFN GFSVKKAEDV VNIMVGRGYA LGKDAMEKAK AFDDRHNLIS NASATIASLD DKMGLSEKLS IGTTVVNEKL RDIDERYQVR
201: EITKSALAAA EETAISARTA LMANPYVSSG ASWFSNAFGA VTKAVKEKVE NGGEGRKEII TLDPSSPKVP AVVPVKLG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.