Factsheet for PGSC0003DMT400016142

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, peroxisome

Predictor Summary:

cytosol 1
golgi 2
plasma membrane 2
plastid 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	97.54	97.54
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	51.64	50.81
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	50.82	50.0
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	50.41	49.6
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	48.77	47.98
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	38.93	47.98
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	47.54	46.96
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	47.95	46.43
PGSC0003DMT400000230	Potato	cytosol, nucleus, plasma membrane	50.41	46.42
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	47.54	46.22
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	46.72	45.6
Os05t0312500-01	Rice	plasma membrane	46.72	45.42
PGSC0003DMT400051387	Potato	cytosol, nucleus, plasma membrane	47.13	45.1
PGSC0003DMT400074360	Potato	cytosol, nucleus, plasma membrane	46.31	44.66
PGSC0003DMT400014404	Potato	cytosol, plasma membrane, vacuole	16.8	43.62
PGSC0003DMT400049928	Potato	cytosol, nucleus, plasma membrane	45.49	43.53
PGSC0003DMT400032086	Potato	cytosol, nucleus, plasma membrane	47.95	43.33
TraesCS1D01G083100.2	Wheat	mitochondrion	46.72	39.45
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	29.92	34.93
PGSC0003DMT400002449	Potato	cytosol, nucleus, plasma membrane	35.66	34.25
PGSC0003DMT400066222	Potato	plasma membrane	28.28	33.82
KRH30696	Soybean	plasma membrane	33.2	32.93
PGSC0003DMT400078544	Potato	endoplasmic reticulum, plasma membrane, vacuole	20.49	32.47
PGSC0003DMT400042905	Potato	cytosol, peroxisome, plasma membrane	29.92	30.67
PGSC0003DMT400074138	Potato	plasma membrane	35.25	28.67
PGSC0003DMT400026113	Potato	plasma membrane, plastid	23.77	23.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400016142	EnsemblPlantsGene:PGSC0003DMG400006308	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	InterPro:Reticulon
PANTHER:PTHR10994	PANTHER:PTHR10994:SF70	PFAM:PF02453	PFscan:PS50845	PGSC:PGSC0003DMG400006308	SEG:seg
TMHMM:TMhelix	UniParc:UPI000295E57F	UniProt:M1A761	MapMan:13.7.2.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006308]

Coordinates

chr9:-:37725361..37727341

Molecular Weight (calculated)

28384.5 Da

IEP (calculated)

8.889

GRAVY (calculated)

-0.042

Length

244 amino acids

Sequence
(BLAST)

001: MSDPVEEIVP ESSAKDQRDY SSSSSTDGDD FRQPTNDKSH LFGRQKPVHA ALGGGKPADI LLWRNKQISA GMLAAATVIW LLFEWIGYHL LTFICHSLIL
101: TLAILFFWSN ISHFVNKTPM EFPEIKLPEK LWTQVALLLR DRFNWAFALF WEVASGKDLK KFLYTILALW IVSIVGSWFD FLTIVYILFV MMLTVPWFYE
201: KHEDQVHTYA QKAKKELKRQ YSHLDEKVLQ KLPKVPFVKD SKQQ

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.