Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G081500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 97.2 | 96.81 |
| HORVU1Hr1G017470.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 92.8 | 93.93 |
| TraesCS1D01G083100.2 | Wheat | mitochondrion | 98.4 | 85.12 |
| Os05t0312500-01 | Rice | plasma membrane | 83.6 | 83.27 |
| KXG21632 | Sorghum | nucleus, peroxisome, plasma membrane | 81.6 | 82.26 |
| Zm00001d037848_P008 | Maize | endoplasmic reticulum, nucleus, peroxisome | 82.4 | 81.75 |
| GSMUA_Achr10P... | Banana | golgi, peroxisome, plasma membrane | 63.2 | 63.71 |
| GSMUA_Achr6P15870_001 | Banana | golgi, peroxisome, plasma membrane | 59.6 | 60.08 |
| GSMUA_Achr5P07570_001 | Banana | golgi, peroxisome, plasma membrane | 58.8 | 59.27 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, peroxisome | 45.6 | 57.58 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 53.2 | 52.57 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 50.4 | 50.6 |
| Solyc06g082740.2.1 | Tomato | nucleus | 44.0 | 48.03 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 46.4 | 47.54 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 53.6 | 46.85 |
| PGSC0003DMT400016142 | Potato | endoplasmic reticulum, golgi, peroxisome | 45.6 | 46.72 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 39.6 | 38.08 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 35.2 | 37.61 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 38.4 | 37.07 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 32.0 | 36.53 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 34.4 | 34.82 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 30.0 | 31.65 |
| KRH30696 | Soybean | plasma membrane | 30.8 | 31.3 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 24.4 | 30.65 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 24.0 | 26.43 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G099200.1 | EnsemblPlantsGene:TraesCS1B01G099200 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF94 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr1B:-:106790728..106792927
Molecular Weight (calculated)
28238.6 Da
IEP (calculated)
8.748
GRAVY (calculated)
-0.010
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSESEEHGS LLEKIGDKIG DKIHEFKKDS SSSDSDDDKK KPHKSKKKHL FGRKHPLHNV LGGGKAADLV MWRDKQKSGS ILGGVTVIWL LFEGIGYHLL
101: TFLCHLLIVF LTVSFVWSNA ASFINRSPPK FPEVILSETQ CLVIAHVLRK EINEAFITLQ SVASGKDLKT YLKSIGVLWF ISIIGGCFSF LTLSYTIFLM
201: AYTLPMLYEK YEDEVDVVGE KALIELKKQY AVFDEKVLSK IPMLADKKQH
101: TFLCHLLIVF LTVSFVWSNA ASFINRSPPK FPEVILSETQ CLVIAHVLRK EINEAFITLQ SVASGKDLKT YLKSIGVLWF ISIIGGCFSF LTLSYTIFLM
201: AYTLPMLYEK YEDEVDVVGE KALIELKKQY AVFDEKVLSK IPMLADKKQH
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.