Factsheet for GSMUA_Achr10P01700_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	76.61	76.61
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	73.39	73.39
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	56.05	70.2
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	65.73	65.73
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	64.52	64.78
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	63.71	63.2
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	63.71	62.95
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	63.71	62.7
Os05t0312500-01	Rice	plasma membrane	61.69	60.96
TraesCS1D01G083100.2	Wheat	mitochondrion	64.11	55.02
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, plasma membrane	54.84	53.97
GSMUA_Achr8P27830_001	Banana	cytosol, peroxisome, plasma membrane	54.03	53.39
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	51.61	52.46
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	54.44	52.33
GSMUA_Achr9P05440_001	Banana	nucleus, peroxisome, plasma membrane	52.82	52.19
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	50.81	51.64
GSMUA_Achr3P31920_001	Banana	cytosol	45.56	51.6
GSMUA_Achr6P31860_001	Banana	cytosol, nucleus, plasma membrane	52.42	51.59
Solyc06g082740.2.1	Tomato	nucleus	46.37	50.22
GSMUA_Achr5P06850_001	Banana	cytosol, nucleus, plasma membrane	48.79	48.4
GSMUA_Achr4P08400_001	Banana	cytosol	48.79	47.83
GSMUA_Achr2P07230_001	Banana	golgi, plasma membrane, vacuole	33.87	40.0
GSMUA_Achr8P31770_001	Banana	peroxisome	34.27	38.12
GSMUA_Achr6P04560_001	Banana	cytosol, peroxisome, plasma membrane	36.69	36.69
KRH30696	Soybean	plasma membrane	36.29	36.59
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	32.26	34.78
GSMUA_Achr9P10200_001	Banana	cytosol, peroxisome, plasma membrane	32.26	33.06
GSMUA_Achr3P15760_001	Banana	cytosol	19.35	32.0
GSMUA_Achr7P05440_001	Banana	peroxisome, plasma membrane, vacuole	27.42	30.49
GSMUA_Achr10P...	Banana	plasma membrane	27.42	29.57
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	28.23	28.34
GSMUA_Achr4P20190_001	Banana	cytosol, plastid	29.03	25.53
GSMUA_Achr6P33560_001	Banana	plasma membrane	27.02	25.38
GSMUA_AchrUn_...	Banana	golgi	34.27	24.15

Protein Annotations

MapMan:13.7.2.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr10G01700_001	EnsemblPlants:GSMUA_Achr10P01700_001	EnsemblPlants:GSMUA_Achr10T01700_001
InterPro:IPR003388	UniProt:M0REJ7	PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF70
InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI0002951021	SEG:seg	:	:

Description

Reticulon-like protein B2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G01700_001]

Coordinates

chr10:-:3960581..3963573

Molecular Weight (calculated)

28242.1 Da

IEP (calculated)

9.241

GRAVY (calculated)

0.069

Length

248 amino acids

Sequence
(BLAST)

001: MSEIGEHASM TEWIDEKIHE YKGSSSSSSD SENDKPSSHG WRKKHLFGRK ASVHAVLGGG KSADIILWRN KQLSGSILAG VTVIWLLFEW IGYHLLTFIC
101: HSFIFSLAVF FVWSNAASFV NRSPPKFPEV ILPEDVFLTT AHAVRYKINE AFATFRCVAS GKDLKKFLRV IGGLWILSMV GSWFSFWTLF YIVFLVLYAT
201: PVLYEKYEDH VDIAAEKAMV EINKHYAVFD AKVLQKIPRG PFSDKKQH

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.