Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G348100.1 | Wheat | plastid | 94.12 | 98.11 |
| TraesCS3B01G380000.1 | Wheat | plastid | 94.12 | 97.65 |
| HORVU3Hr1G088130.1 | Barley | plastid | 96.83 | 97.27 |
| Os01t0827400-01 | Rice | extracellular, mitochondrion, plasma membrane | 57.92 | 88.28 |
| EES03822 | Sorghum | plastid | 85.97 | 85.2 |
| Zm00001d043018_P001 | Maize | mitochondrion | 84.62 | 85.0 |
| HORVU2Hr1G086930.1 | Barley | cytosol, plastid | 40.27 | 79.46 |
| TraesCS1D01G293300.1 | Wheat | plastid | 74.21 | 74.21 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 58.82 | 60.47 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 58.37 | 59.72 |
| TraesCS4D01G132000.1 | Wheat | plastid | 55.66 | 54.19 |
| TraesCS5D01G156800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 50.23 | 49.12 |
| PGSC0003DMT400034320 | Potato | plastid | 46.61 | 48.58 |
| CDY07736 | Canola | plastid | 48.42 | 48.2 |
| CDY63156 | Canola | plastid | 47.51 | 48.17 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 18.1 | 47.62 |
| Bra000056.1-P | Field mustard | plastid | 47.51 | 47.3 |
| CDX80758 | Canola | plastid | 45.7 | 47.2 |
| KRH76033 | Soybean | endoplasmic reticulum | 46.61 | 47.03 |
| AT2G38360.1 | Thale cress | plastid | 46.61 | 46.82 |
| Solyc10g076360.1.1 | Tomato | plastid | 47.06 | 46.43 |
| KRH65569 | Soybean | plastid | 47.06 | 45.81 |
| PGSC0003DMT400041063 | Potato | plastid | 47.06 | 45.61 |
| KRH49465 | Soybean | plastid | 44.8 | 44.39 |
| OQU79263 | Sorghum | plastid | 33.03 | 44.24 |
| KRH00333 | Soybean | plastid | 44.8 | 43.61 |
| AT5G01640.1 | Thale cress | plastid | 42.99 | 42.6 |
| CDY61529 | Canola | plastid | 23.98 | 42.06 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 22.17 | 41.53 |
| Bra005112.1-P | Field mustard | plastid | 29.86 | 39.29 |
| KRH32827 | Soybean | plastid | 39.37 | 38.5 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 30.32 | 36.81 |
| TraesCS1D01G130300.1 | Wheat | plastid | 30.32 | 35.08 |
| TraesCS3D01G106500.1 | Wheat | plastid | 29.41 | 34.21 |
| TraesCS5D01G450800.1 | Wheat | plastid | 28.96 | 27.47 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G341700.1 | EnsemblPlantsGene:TraesCS3D01G341700 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF12 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:454756853..454757518
Molecular Weight (calculated)
23226.0 Da
IEP (calculated)
9.839
GRAVY (calculated)
0.445
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPTPQPL LPVTNPSSGG GGSAPSAGSG LTDSALATPA FRLFLSRVSD TARRSLADRR PWTELIDRSA ISRPDSLSEA TSRLRRNLGY FRVNYAAVVA
101: FSLAASLLAH PFSLLVLLGI LGAWCFLYVF RAPDQPVVLF GRTFTDRETL LGLVVSSLLA FFLTSVASLI ISGLLVGGAL VAVHGAFRMP EDLFLDDSSS
201: VSSGNTSHRL LSFLASPGSG V
101: FSLAASLLAH PFSLLVLLGI LGAWCFLYVF RAPDQPVVLF GRTFTDRETL LGLVVSSLLA FFLTSVASLI ISGLLVGGAL VAVHGAFRMP EDLFLDDSSS
201: VSSGNTSHRL LSFLASPGSG V
001: MGLFFMNLLK STWTVEMLRC RERSMVRVIT RDHDVNTGNR LLQKKSIHSY GPLIHAPSSH PHAQSCVMMA NPPTLPISDH SGGGSQSQQP VSTPAFRTFL
101: SRLSSSIRQS LSQRRPWLEL VDRSAISRPE SLTDAYSRIR RNLPYFKVNY VTIVSLVLAL SLLSHPFSLL VLLCLFCAWI FLYLFRPSDQ PLVVLGRTFS
201: DRETLGVLVI LTIVVVFLTS VGSLLTSALM IGFGIVCLHG AFRVPEDLFL DDQEPANTGL LSFLSGAATS AAVAAASTPA SGRV
101: SRLSSSIRQS LSQRRPWLEL VDRSAISRPE SLTDAYSRIR RNLPYFKVNY VTIVSLVLAL SLLSHPFSLL VLLCLFCAWI FLYLFRPSDQ PLVVLGRTFS
201: DRETLGVLVI LTIVVVFLTS VGSLLTSALM IGFGIVCLHG AFRVPEDLFL DDQEPANTGL LSFLSGAATS AAVAAASTPA SGRV
Arabidopsis Description
PRA1.B3prenylated RAB acceptor 1.B3 [Source:TAIR;Acc:AT5G05380]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.