Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G13710.1 | Thale cress | plasma membrane | 80.32 | 80.32 |
| AT1G55190.1 | Thale cress | plasma membrane | 72.34 | 71.96 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 60.11 | 62.09 |
| Solyc03g121460.1.1 | Tomato | plastid | 58.51 | 60.44 |
| KRH10001 | Soybean | mitochondrion | 58.51 | 59.78 |
| KRH23330 | Soybean | plastid | 58.51 | 59.78 |
| KRH47141 | Soybean | plasma membrane | 52.66 | 55.62 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 56.38 | 54.92 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 54.26 | 54.26 |
| KRH44167 | Soybean | plasma membrane | 50.53 | 53.98 |
| TraesCS3D01G106500.1 | Wheat | plastid | 48.94 | 48.42 |
| TraesCS3B01G122600.1 | Wheat | plastid | 48.94 | 48.42 |
| CDY55133 | Canola | plasma membrane | 54.79 | 48.36 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 49.47 | 48.19 |
| CDY37482 | Canola | plastid | 53.19 | 47.85 |
| AT1G17700.1 | Thale cress | plasma membrane | 45.74 | 47.78 |
| TraesCS3A01G104300.1 | Wheat | plastid | 48.4 | 47.64 |
| TraesCS1B01G143000.1 | Wheat | plastid | 47.87 | 46.88 |
| EES00126 | Sorghum | plastid | 47.87 | 46.88 |
| TraesCS1D01G130300.1 | Wheat | plastid | 47.34 | 46.6 |
| TraesCS1A01G124100.1 | Wheat | plastid | 47.34 | 46.6 |
| CDY51733 | Canola | plastid | 52.66 | 46.26 |
| Bra021502.1-P | Field mustard | plastid | 52.66 | 46.26 |
| Bra021503.1-P | Field mustard | plastid | 51.06 | 46.15 |
| Os05t0200280-01 | Rice | plasma membrane | 47.34 | 46.11 |
| CDY51734 | Canola | plastid | 51.06 | 45.93 |
| Os01t0196500-01 | Rice | plastid | 48.94 | 45.77 |
| HORVU1Hr1G028520.1 | Barley | plastid | 47.34 | 41.2 |
| Zm00001d037747_P001 | Maize | plastid | 39.36 | 39.36 |
| OQU77594 | Sorghum | plastid | 40.96 | 39.29 |
| AT4G29658.2 | Thale cress | plastid | 37.23 | 36.84 |
| HORVU3Hr1G018940.2 | Barley | plastid | 49.47 | 36.47 |
| AT1G08770.1 | Thale cress | plastid | 38.3 | 34.45 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 31.91 | 32.26 |
| AT3G56110.1 | Thale cress | plastid | 35.11 | 31.58 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 19.15 | 30.51 |
| AT2G40380.1 | Thale cress | plastid | 34.04 | 30.05 |
| AT2G38360.1 | Thale cress | plastid | 32.98 | 28.18 |
| AT5G07110.1 | Thale cress | plastid | 31.91 | 27.78 |
| AT1G04260.1 | Thale cress | plasma membrane | 26.06 | 26.92 |
| AT1G55640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 26.06 | 26.2 |
| AT5G01640.1 | Thale cress | plastid | 30.32 | 25.56 |
| AT5G05380.2 | Thale cress | plasma membrane | 35.64 | 23.59 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:820581 | ProteinID:AEE75403.1 | ArrayExpress:AT3G13720 | EnsemblPlantsGene:AT3G13720 | RefSeq:AT3G13720 |
| TAIR:AT3G13720 | RefSeq:AT3G13720-TAIR-G | EnsemblPlants:AT3G13720.1 | TAIR:AT3G13720.1 | EMBL:AY088623 | ProteinID:BAB01921.1 |
| EMBL:BT004174 | EMBL:BT004952 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | RefSeq:NP_566461.1 | PFAM:PF03208 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | Symbol:PRA1.F3 | PANTHER:PTHR19317 |
| PANTHER:PTHR19317:SF2 | InterPro:Prenylated_rab_accept_PRA1 | UniProt:Q9LIC6 | TMHMM:TMhelix | UniParc:UPI000000C2C3 | SEG:seg |
Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
Coordinates
chr3:-:4494979..4496800
Molecular Weight (calculated)
21117.1 Da
IEP (calculated)
9.447
GRAVY (calculated)
0.639
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.