Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51077 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 67.91 | 68.65 |
| Bra038009.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 66.84 | 67.2 |
| CDY50022 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 65.78 | 66.13 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 38.5 | 38.71 |
| PGSC0003DMT400056954 | Potato | plasma membrane | 35.83 | 35.83 |
| Solyc07g066190.1.1 | Tomato | plasma membrane, plastid | 36.9 | 35.75 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 19.25 | 30.51 |
| AT1G55190.1 | Thale cress | plasma membrane | 28.34 | 28.04 |
| AT3G13710.1 | Thale cress | plasma membrane | 26.74 | 26.6 |
| AT1G04260.1 | Thale cress | plasma membrane | 25.67 | 26.37 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 26.2 | 26.06 |
| AT5G01640.1 | Thale cress | plastid | 30.48 | 25.56 |
| AT4G29658.2 | Thale cress | plastid | 25.67 | 25.26 |
| AT1G17700.1 | Thale cress | plasma membrane | 24.06 | 25.0 |
| AT5G07110.1 | Thale cress | plastid | 28.34 | 24.54 |
| AT2G38360.1 | Thale cress | plastid | 28.34 | 24.09 |
| AT3G56110.1 | Thale cress | plastid | 26.74 | 23.92 |
| AT2G40380.1 | Thale cress | plastid | 26.2 | 23.0 |
| AT1G08770.1 | Thale cress | plastid | 23.53 | 21.05 |
| AT5G05380.2 | Thale cress | plasma membrane | 26.2 | 17.25 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:842013 | ProteinID:AAF79494.1 | ProteinID:AEE33277.1 | ArrayExpress:AT1G55640 | EnsemblPlantsGene:AT1G55640 |
| RefSeq:AT1G55640 | TAIR:AT1G55640 | RefSeq:AT1G55640-TAIR-G | EnsemblPlants:AT1G55640.1 | TAIR:AT1G55640.1 | EMBL:DQ056498 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010008 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 |
| RefSeq:NP_175960.1 | PFAM:PF03208 | PO:PO:0000013 | PO:PO:0000256 | PO:PO:0005660 | PO:PO:0009005 |
| PO:PO:0020030 | Symbol:PRA1.G1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF11 | InterPro:Prenylated_rab_accept_PRA1 | UniProt:Q9ZWD1 |
| TMHMM:TMhelix | UniParc:UPI00000AAEC7 | : | : | : | : |
Description
PRA1G1PRA1 family protein G1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWD1]
Coordinates
chr1:+:20793720..20794577
Molecular Weight (calculated)
20783.5 Da
IEP (calculated)
6.383
GRAVY (calculated)
0.812
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAPGESVLI PAEEISLSAG DVISLSVHNL IASVSSYRPW WSEFLAFGSI DRPSSFSPAV SRVKLNLHHF AVNYVLLTAA SITLFLIGDP MALVTVASFV
101: AMWLLLYFYR DHPLVLYGRH ISDRVIVFGL ILGSLWALWF INSLQCLILG VVTSVLLCLV HAIIRNSDDL FVQEKDVVVP SNFLHWS
101: AMWLLLYFYR DHPLVLYGRH ISDRVIVFGL ILGSLWALWF INSLQCLILG VVTSVLLCLV HAIIRNSDDL FVQEKDVVVP SNFLHWS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.