Factsheet for PGSC0003DMT400044855

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006409

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	PGSC0003DMT400006409	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g045310.2.1	Tomato	nucleus	94.84	95.41
VIT_12s0057g01250.t01	Wine grape	plastid	74.21	75.25
AT3G07670.1	Thale cress	plastid	73.41	73.41
KRH17729	Soybean	plastid	70.83	71.54
Bra040022.1-P	Field mustard	plastid	71.83	71.4
CDY22127	Canola	plastid	71.43	71.01
GSMUA_Achr3P10760_001	Banana	plastid	69.05	69.32
Os02t0725200-01	Rice	plasma membrane	66.67	66.93
Zm00001d051668_P001	Maize	plastid	65.87	66.0
EES07338	Sorghum	plastid	64.68	65.33
TraesCS6B01G315800.1	Wheat	plastid	65.28	64.89
TraesCS6A01G286800.2	Wheat	plastid	64.88	64.88
TraesCS6D01G267500.2	Wheat	plastid	65.08	64.57
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	65.08	62.84
Zm00001d051669_P002	Maize	plastid	62.1	61.25
Zm00001d034120_P001	Maize	cytosol	9.33	41.23
PGSC0003DMT400017960	Potato	plastid	22.42	21.52
PGSC0003DMT400073004	Potato	plastid	20.24	21.43
PGSC0003DMT400072873	Potato	plastid	19.84	20.49

Protein Annotations

EntrezGene:102602761	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:50.2.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016740	GO:GO:0030785
GO:GO:0032259	InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464	UniProt:M1BGS3	PFAM:PF00856
PFAM:PF09273	EnsemblPlantsGene:PGSC0003DMG400017407	PGSC:PGSC0003DMG400017407	EnsemblPlants:PGSC0003DMT400044855	PIRSF:PIRSF009328	PFscan:PS50280
PANTHER:PTHR13271	PANTHER:PTHR13271:SF81	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom
SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0002967A88	RefSeq:XP_006357659.1	SEG:seg

Description

Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400017407]

Coordinates

chr7:+:43305878..43314764

Molecular Weight (calculated)

57499.7 Da

IEP (calculated)

8.726

GRAVY (calculated)

-0.371

Length

504 amino acids

Sequence
(BLAST)

001: MAEVSRILQS VLLPPFSNKL DGITNSHFSS YKLYRRNKLN ISIRCSSIST TEATKSTKTQ NIPWGCETDS LENASNLQKW LSESGLPSQK MDLQRVDVGE
101: RGLVANNNIR KGEKLLFVPP SLVITADSKW SNSDAGDVLK QYNVPDWPFI ATYLISEASL MKSSRWSNYI SALPRQPYSL LYWTQSELDR YLEASQIRQR
201: AVERINNVIG TYNDLRLRIF SKHPDLFPEE IFNQDTFNWS FGILFSRLVR LPSMDGRVAL VPWADMLNHN CEVETFLDYD KSSQGIVFTT DRVYLPGEQV
301: FISYGRKSNG ELLLSYGFVP KEGTNPSDSV EVSLALKKSD KCYKEKVEAL KKHGLSASEC FPVQVTGWPL ELMAFAYLVV SPPSMSRQFE EMAAAASNKA
401: TSKKDIKYPE IEEDALQFIL DSCESSISKY SKFLQASGEM DLDVTNPKQL NRRLFLKQLA VDLCTSERRI LYRSQYILRR RLRDIRSGEL KALNLFDGLK
501: NLFK

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.